Factsheet for VIT_14s0036g00510.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0049g01840.t01
VIT_05s0077g02310.t01
VIT_17s0000g02840.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09770.1	VIT_05s0049g01840.t01	AT1G04510.1	19629177
AT1G09770.1	VIT_17s0000g02840.t01	AT3G18165.1	17575050
AT1G09770.1	VIT_05s0077g02310.t01	AT4G15900.1	17575050

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G09770.1	Thale cress	nucleus	59.92	70.14
Bra019993.1-P	Field mustard	nucleus	58.6	68.6
CDX93482	Canola	nucleus	58.5	68.4
CDX94951	Canola	nucleus	58.2	68.05
CDY31065	Canola	nucleus	58.3	68.0
KRG92639	Soybean	nucleus	66.19	67.91
Bra030798.1-P	Field mustard	nucleus	58.0	67.65
KRH34143	Soybean	nucleus	65.79	67.57
CDY20673	Canola	nucleus	57.69	67.3
PGSC0003DMT400029953	Potato	nucleus	65.18	65.31
Solyc04g009950.2.1	Tomato	nucleus	64.78	64.84
Zm00001d042287_P001	Maize	extracellular, nucleus, plasma membrane	60.63	64.76
Os04t0348300-01	Rice	nucleus	61.94	62.96
EES15997	Sorghum	nucleus	61.84	61.97
CDY47227	Canola	nucleus	14.68	61.44
KXG34025	Sorghum	nucleus	61.03	61.34
TraesCS5D01G460800.1	Wheat	nucleus	61.84	60.32
Bra027160.1-P	Field mustard	nucleus	14.37	60.17
TraesCS5B01G459200.1	Wheat	nucleus	62.15	60.02
TraesCS5A01G450800.1	Wheat	nucleus	62.04	59.75
CDY53058	Canola	nucleus	14.27	59.75
HORVU5Hr1G108630.3	Barley	nucleus	62.04	57.94
GSMUA_Achr9P23340_001	Banana	nucleus	65.59	57.5
TraesCS5D01G314000.1	Wheat	nucleus	61.34	57.22
HORVU5Hr1G080010.3	Barley	nucleus	61.64	56.92
TraesCS5B01G307500.2	Wheat	nucleus	61.84	56.37
TraesCS5A01G307100.1	Wheat	nucleus	61.64	56.34
VIT_14s0036g00500.t01	Wine grape	nucleus	1.11	16.42

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100243262	wikigene:100243262	MapMan:15.5.2.2	MapMan:16.4.5.1.2	ProteinID:CCB47659
ProteinID:CCB47659.1	InterPro:Cdc5p/Cef1	ncoils:Coil	UniProt:F6H620	EMBL:FN595241	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139
GO:GO:0006357	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009605	GO:GO:0009607	GO:GO:0009870
GO:GO:0009987	GO:GO:0010204	GO:GO:0030154	GO:GO:0042742	GO:GO:0043565	GO:GO:0044212
GO:GO:0050832	InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:LOC100243262	wikigene:LOC100243262	InterPro:Myb_dom
PFAM:PF11831	PFAM:PF13921	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF559	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	TIGR:TC56784	UniParc:UPI0002108FF4	ArrayExpress:VIT_14s0036g00510	EnsemblPlantsGene:VIT_14s0036g00510
EnsemblPlants:VIT_14s0036g00510.t01	RefSeq:XP_002265478	RefSeq:XP_002265478.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr14:+:10276245..10296127

Molecular Weight (calculated)

110040.0 Da

IEP (calculated)

4.768

GRAVY (calculated)

-0.879

Length

988 amino acids

Sequence
(BLAST)

001: MTFVNLLIAE DNLEAPVRSP GNLTTLKSPP MHHGSTEWTR EEDEKLLHLA KLMPTQWRTI APIVGRTPSQ CLERYEKLLD AACVKDENYE PGDDPRKLRP
101: GEIDPNPESK PARPDPVDMD EDEKEMLSEA RARLANTRGK KAKRKAREKQ LEEARRLASL QKRRELKAAG IDGRHRKRKR KGIDYNAEIP FEKKPPPGFF
201: DVTDEERLVE QPKFPTTIEE LEGKRRVDVE AQLRKQDVAK NKIAQRQDAP SAILQANKMN DPETVRKRSK LMLPAPQISD HELEEIAKMG YASDLLAGNE
301: ELTEGSGATR ALLANYSQTP RQGMTPLRTP QRTPAGKGDA IMMEAENLAR LRESQTPLLG GENPELHPSD FSGVTPKRRD VQTPNLMLTP SATPGGVGST
401: PRISMTPSRD AHSFGITPKG TPIRDELHIN EDMDMHDSAK LELRRQADLR RNLRSGLGSL PQPKNEYQVV IQPIPEDNEE PEEKIEEDMS DRLARERAEE
501: EARQQALLRK RSKVLQRELP RPPVASLDLI RNSLMRADED KSSFVPPTLI EQADEMIRKE LLGLLEHDNA KYPLDEKTEK EKKKGGKRSA NGKSAGSVPD
601: IEDFEEAELK EADNLIKEEV QFLRVAMGHD NESLDEFVEA HKTCLNDLMY FPTRDAYGLS SVAGNMEKLA ALQNEFDNVK KRMEDDTKKA QRLEQKIKLL
701: THGYQMRAGK LWTQIEATFK QMDTAGTELE CFQALQKQEQ LAASHRINGL WEEVQKQKEL EQTLQSRYGD LIAEQERIQS LINEYRVQAK IQEEIAAKNH
801: ALELAEAEMC QMDVENPEPA AADELGNSVQ VDPSHGGLPD QKMDSSQEEY HTSPKHDADA DADAANHITV AGLETPDAVA ASDVLGNSFP ADPSHDEMPG
901: QKLDAAEGEA HASPNPDVNV GAENETIVPD TETAEPVCPS DELGKSMPVG SSRDGTPNDQ MGAVQAEAYA STKLDGDVGA EAQDGGGS

Best Arabidopsis Sequence Match ( AT1G09770.1 )
(BLAST)

001: MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT EWTREEDEKL LHLAKLLPTQ WRTIAPIVGR TPSQCLERYE
101: KLLDAACTKD ENYDAADDPR KLRPGEIDPN PEAKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR LASLQKRREL KAAGIDGRHR
201: KRKRKGIDYN AEIPFEKRAP AGFYDTADED RPADQVKFPT TIEELEGKRR ADVEAHLRKQ DVARNKIAQR QDAPAAILQA NKLNDPEVVR KRSKLMLPPP
301: QISDHELEEI AKMGYASDLL AENEELTEGS AATRALLANY SQTPRQGMTP MRTPQRTPAG KGDAIMMEAE NLARLRDSQT PLLGGENPEL HPSDFTGVTP
401: RKKEIQTPNP MLTPSMTPGG AGLTPRIGLT PSRDGSSFSM TPKGTPFRDE LHINEDMDMH ESAKLERQRR EEARRSLRSG LTGLPQPKNE YQIVAQPPPE
501: ESEEPEEKIE EDMSDRIARE KAEEEARQQA LLKKRSKVLQ RDLPRPPAAS LAVIRNSLLS ADGDKSSVVP PTPIEVADKM VREELLQLLE HDNAKYPLDD
601: KAEKKKGAKN RTNRSASQVL AIDDFDENEL QEADKMIKEE GKFLCVSMGH ENKTLDDFVE AHNTCVNDLM YFPTRSAYEL SSVAGNADKV AAFQEEMENV
701: RKKMEEDEKK AEHMKAKYKT YTKGHERRAE TVWTQIEATL KQAEIGGTEV ECFKALKRQE EMAASFRKKN LQEEVIKQKE TESKLQTRYG NMLAMVEKAE
801: EIMVGFRAQA LKKQEDVEDS HKLKEAKLAT GEEEDIAIAM EASA

Arabidopsis Description

CDC5Cell division cycle 5-like protein [Source:UniProtKB/Swiss-Prot;Acc:P92948]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.