Factsheet for VIT_17s0000g02840.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0404g00060.t01
VIT_01s0026g00040.t01
VIT_04s0044g00540.t01
VIT_05s0049g01840.t01
VIT_05s0077g02310.t01
VIT_05s0094g00800.t01
VIT_05s0102g00480.t01
VIT_06s0004g01750.t01
VIT_08s0040g00270.t01
VIT_08s0056g01110.t01
VIT_09s0002g06760.t01
VIT_09s0002g07070.t01
VIT_13s0019g00880.t01
VIT_14s0036g00510.t01
VIT_15s0021g00480.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18165.1	VIT_05s0049g01840.t01	AT1G04510.1	19629177
AT3G18165.1	VIT_14s0036g00510.t01	AT1G09770.1	17575050
AT3G18165.1	VIT_14s0036g00510.t01	AT1G09770.1	19629177
AT3G18165.1	VIT_01s0026g00040.t01	AT1G10580.1	19629177
AT3G18165.1	VIT_05s0102g00480.t01	AT1G20960.1	19629177
AT3G18165.1	VIT_09s0002g07070.t01	AT1G80070.1	19629177
AT3G18165.1	VIT_05s0049g01840.t01	AT2G33340.1	19629177
AT3G18165.1	VIT_08s0056g01110.t01	AT2G38770.1	19629177
AT3G18165.1	VIT_13s0019g00880.t01	AT2G38770.1	19629177
AT3G18165.1	VIT_05s0094g00800.t01	AT2G43770.1	19629177
AT3G18165.1	VIT_09s0002g06760.t01	AT3G15730.1	19629177
AT3G18165.1	VIT_04s0044g00540.t01	AT3G18790.1	19629177
AT3G18165.1	VIT_06s0004g01750.t01	AT3G20820.1	19629177
AT3G18165.1	VIT_15s0021g00480.t01	AT3G60190.1	19629177
AT3G18165.1	VIT_05s0077g02310.t01	AT4G15900.1	19629177
AT3G18165.1	VIT_00s0404g00060.t01	AT5G28740.1	19629177
AT3G18165.1	VIT_08s0040g00270.t01	AT5G64270.1	19629177

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24603	Canola	cytosol	25.6	60.23
KRH41788	Soybean	nucleus	71.5	58.73
PGSC0003DMT400014424	Potato	nucleus	70.53	58.17
KRH60495	Soybean	endoplasmic reticulum, nucleus	71.01	58.1
Solyc03g119010.2.1	Tomato	nucleus	66.67	57.5
AT3G18165.1	Thale cress	cytosol	61.35	50.2
Bra022288.1-P	Field mustard	nucleus	59.42	48.62
CDX92209	Canola	nucleus	59.42	48.62
CDY24431	Canola	nucleus	59.42	48.62
CDX95551	Canola	cytosol	57.97	47.43
Bra021297.1-P	Field mustard	cytosol	57.49	47.04
EES00531	Sorghum	cytosol	57.0	46.46
GSMUA_Achr3P18370_001	Banana	cytosol	30.92	44.76
TraesCS3D01G186100.1	Wheat	cytosol	54.11	43.75
TraesCS3B01G211300.1	Wheat	cytosol	54.11	43.75
TraesCS3A01G181200.1	Wheat	nucleus	53.62	43.36
HORVU3Hr1G037080.1	Barley	plastid	54.59	37.92
GSMUA_Achr3P18380_001	Banana	cytosol	33.82	34.65
Zm00001d040357_P001	Maize	cytosol	57.49	32.96
CDY18500	Canola	cytosol	57.49	19.87

Protein Annotations

EntrezGene:100254130	wikigene:100254130	MapMan:16.4.5.1.1	ProteinID:CBI15531	ProteinID:CBI15531.3	ncoils:Coil
UniProt:D7SJ70	EMBL:FN594950	GO:GO:0000974	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0006397	GO:GO:0006950	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605	GO:GO:0009607	GO:GO:0009870
GO:GO:0009987	GO:GO:0010204	GO:GO:0042742	GO:GO:0050832	GO:GO:0071011	GO:GO:0071013
EntrezGene:LOC100254130	wikigene:LOC100254130	PFAM:PF05700	PANTHER:PTHR13296	InterPro:SPF27	TIGR:TC57257
UniParc:UPI0001BE0AA1	ArrayExpress:VIT_17s0000g02840	EnsemblPlantsGene:VIT_17s0000g02840	EnsemblPlants:VIT_17s0000g02840.t01	unigene:Vvi.3477	RefSeq:XP_002281066
RefSeq:XP_002281066.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr17:+:2596204..2605608

Molecular Weight (calculated)

24313.0 Da

IEP (calculated)

9.670

GRAVY (calculated)

-0.994

Length

207 amino acids

Sequence
(BLAST)

001: MRRSSKKPSD FLKDLPPLPP FGFHNHPMLA REYERVRAGK PPVALDMSRY GLEMPPMNKR NDETAWKHAL QKAQRLLQHQ VIRLENLELM SKHGADVWKQ
101: HNQRLEAYLS RMQALAMEQN EKIETVNRER KYHQQNTAFE LNALSAQWKE LCEKNIEIRT ACAKIENNIE ELRREAAERG WNLDANIDNG SLSHSEQHQQ
201: IQKTLTK

Best Arabidopsis Sequence Match ( AT3G18165.1 )
(BLAST)

001: MATNNGDVLM LEATPEAARP WASAANAEVI DALPYIDDDY GNPLIKSEVD RLVEEEMRRS SKKPADFLKD LPPLPKFDFK NCPVLGKEYE RVRAGKPPVR
101: IDFESRYKLE MPPANKRNDD AAWKQYLQKN QRSLQQKLIE LENLELMSKL GPELWRQNNH RLEVFLTRMQ RLAQEQNEEI EKVNRERKYH QQTTSYELNA
201: LSQEWRQLCV KNMEIQSACA MLETQIDSFK KEAAERGWNL EEKLENVEPL QMQ

Arabidopsis Description

MOS4Pre-mRNA-splicing factor SPF27 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q949S9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.