Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92209 | Canola | nucleus | 93.28 | 93.28 |
| CDY24431 | Canola | nucleus | 92.49 | 92.49 |
| AT3G18165.1 | Thale cress | cytosol | 90.12 | 90.12 |
| CDY24603 | Canola | cytosol | 28.46 | 81.82 |
| Solyc03g119010.2.1 | Tomato | nucleus | 63.24 | 66.67 |
| PGSC0003DMT400014424 | Potato | nucleus | 65.61 | 66.14 |
| KRH60495 | Soybean | endoplasmic reticulum, nucleus | 60.08 | 60.08 |
| KRH41788 | Soybean | nucleus | 58.1 | 58.33 |
| GSMUA_Achr3P18370_001 | Banana | cytosol | 32.81 | 58.04 |
| VIT_17s0000g02840.t01 | Wine grape | cytosol, mitochondrion, nucleus | 47.43 | 57.97 |
| EES00531 | Sorghum | cytosol | 54.55 | 54.33 |
| TraesCS3A01G181200.1 | Wheat | nucleus | 54.94 | 54.3 |
| TraesCS3B01G211300.1 | Wheat | cytosol | 54.15 | 53.52 |
| TraesCS3D01G186100.1 | Wheat | cytosol | 54.15 | 53.52 |
| HORVU3Hr1G037080.1 | Barley | plastid | 54.15 | 45.97 |
| CDY18500 | Canola | cytosol | 98.42 | 41.57 |
| Zm00001d040357_P001 | Maize | cytosol | 55.34 | 38.78 |
| GSMUA_Achr3P18380_001 | Banana | cytosol | 26.09 | 32.67 |
Protein Annotations
| EnsemblPlants:CDX95551 | EnsemblPlantsGene:GSBRNA2T00101395001 | GO:A0A078E2N2 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | InterPro:SPF27 | ncoils:Coil | PANTHER:PTHR13296 | PFAM:PF05700 |
| ProteinID:CDX95551 | ProteinID:CDX95551.1 | UniParc:UPI0004EF0AB6 | MapMan:16.4.5.1.1 | : | : |
Description
BnaC01g34430D
Coordinates
chrLK031889:-:1201264..1203268
Molecular Weight (calculated)
29488.1 Da
IEP (calculated)
5.178
GRAVY (calculated)
-0.858
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MATNNGDVLM LEAAPEASKP WASAANAEVI DALPYIDDDY GNPLIKAEVD RLVEEEMRRS SRKPADFLKE LPPLPKFDFE NCPVLAKEYE RVRAGKPPVR
101: IDFESRYKLE LPPASKKNDD AAWKQYLQKN QRSLQQKMIE LENLEMMAKQ GPELWRQNNH RLEVFLTRMQ KLAQEQNEEI EKVNRERKYH QQTTAYELNA
201: LSQEWRQLCV KNMEIQSACV VLETKIDAFK KEAAERGWNL EEKLESAKPL QPQ
101: IDFESRYKLE LPPASKKNDD AAWKQYLQKN QRSLQQKMIE LENLEMMAKQ GPELWRQNNH RLEVFLTRMQ KLAQEQNEEI EKVNRERKYH QQTTAYELNA
201: LSQEWRQLCV KNMEIQSACV VLETKIDAFK KEAAERGWNL EEKLESAKPL QPQ
001: MATNNGDVLM LEATPEAARP WASAANAEVI DALPYIDDDY GNPLIKSEVD RLVEEEMRRS SKKPADFLKD LPPLPKFDFK NCPVLGKEYE RVRAGKPPVR
101: IDFESRYKLE MPPANKRNDD AAWKQYLQKN QRSLQQKLIE LENLELMSKL GPELWRQNNH RLEVFLTRMQ RLAQEQNEEI EKVNRERKYH QQTTSYELNA
201: LSQEWRQLCV KNMEIQSACA MLETQIDSFK KEAAERGWNL EEKLENVEPL QMQ
101: IDFESRYKLE MPPANKRNDD AAWKQYLQKN QRSLQQKLIE LENLELMSKL GPELWRQNNH RLEVFLTRMQ RLAQEQNEEI EKVNRERKYH QQTTSYELNA
201: LSQEWRQLCV KNMEIQSACA MLETQIDSFK KEAAERGWNL EEKLENVEPL QMQ
Arabidopsis Description
MOS4Pre-mRNA-splicing factor SPF27 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q949S9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.