Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78961 | Canola | cytosol | 99.25 | 97.35 |
| CDY65286 | Canola | nucleus | 10.42 | 95.77 |
| CDY67065 | Canola | cytosol | 4.03 | 90.91 |
| CDY66547 | Canola | cytosol | 19.17 | 88.56 |
| CDY68930 | Canola | nucleus | 8.98 | 87.15 |
| CDY19067 | Canola | extracellular, mitochondrion | 3.91 | 83.95 |
| CDY35524 | Canola | cytosol | 19.8 | 78.18 |
| CDX74881 | Canola | nucleus | 10.59 | 74.19 |
| Bra013431.1-P | Field mustard | cytosol | 98.62 | 72.31 |
| CDY58771 | Canola | cytosol, golgi | 2.25 | 72.22 |
| CDX87291 | Canola | cytosol, golgi | 2.25 | 72.22 |
| CDX91499 | Canola | cytosol | 24.24 | 71.97 |
| AT1G80070.1 | Thale cress | cytosol | 96.78 | 71.26 |
| CDX91500 | Canola | cytosol | 10.36 | 70.31 |
| CDX74882 | Canola | nucleus | 77.14 | 65.27 |
| CDX91498 | Canola | endoplasmic reticulum, golgi, plasma membrane | 53.37 | 63.28 |
| CDY47696 | Canola | endoplasmic reticulum, golgi | 52.04 | 61.79 |
| CDY57684 | Canola | cytosol | 1.84 | 60.38 |
| CDY16708 | Canola | nucleus | 2.76 | 55.17 |
| HORVU7Hr1G073700.1 | Barley | cytosol | 0.29 | 17.24 |
| CDY17826 | Canola | cytosol, nucleus, plastid | 0.17 | 3.06 |
Protein Annotations
| Gene3D:1.20.58.1750 | Gene3D:1.20.80.40 | MapMan:16.4.1.4.4 | Gene3D:3.30.420.230 | Gene3D:3.40.140.10 | Gene3D:3.90.1570.40 |
| GO:A0A078IPM5 | UniProt:A0A078IPM5 | EnsemblPlants:CDY51887 | ProteinID:CDY51887 | ProteinID:CDY51887.1 | ncoils:Coil |
| GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0017070 | GO:GO:0030623 | EnsemblPlantsGene:GSBRNA2T00004464001 |
| InterPro:IPR037518 | InterPro:JAMM/MPN+_dom | InterPro:MPN | PFAM:PD149576 | PFAM:PF01398 | PFAM:PF08082 |
| PFAM:PF08083 | PFAM:PF08084 | PFAM:PF10596 | PFAM:PF10597 | PFAM:PF12134 | InterPro:PRO8NT |
| InterPro:PROCN | InterPro:PROCT | InterPro:PRP8 | InterPro:PRP8_domainIV | PFscan:PS50249 | PANTHER:PTHR11140 |
| InterPro:Prp8_U5-snRNA-bd | InterPro:Prp8_U6-snRNA-bd | InterPro:RNaseH-like_sf | SMART:SM00232 | SUPFAM:SSF53098 | UniParc:UPI0004EDD0A2 |
| SEG:seg | : | : | : | : | : |
Description
BnaC01g41280DBnaC01g41280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IPM5]
Coordinates
chrLK033037:-:36710..44273
Molecular Weight (calculated)
202143.0 Da
IEP (calculated)
8.098
GRAVY (calculated)
-0.516
Length
1737 amino acids
Sequence
(BLAST)
(BLAST)
0001: MWNNNDAMPL APPGTGGSMI PPPHPSYTAL PPHPSNPTAP PVEPTPEEAE AKLEEKARKW MQLNSKRYGD KRKFGFVETQ KEDMPPEHVR KIIRDHGDMS
0101: SKKFRHDKRV YLGALKFVPH AVFKLLENMP MPWEQVRDVK VLYHITGAIT FVNEIPWVVE PIYMAQWGTM WIMMRREKRD RRHFKRMRFP PFDDEEPPLD
0201: YADNLLDVDP LEPIQLELDE EEDSAVHTWF YDHKPLVKTK LINGPSYRKW NLSLPIMATL HRLAGQLLSD LIDRNYFYLF DMPSFFTAKA LNMCIPGGPK
0301: FEPLYRDMEK GDEDWNEFND INKLIIRSPL RTEYRIGFPH LYNNRPRKVK LCVYHSPMVM YIKTEDPDLP AFYYDPLLHP ISNTNKERRE RNVFEDDGED
0401: EFILPEGVEP LLKDTHLYTD TTAAGISLLF APRPFNMRSG RTRRSEDIPL VSEWFKEHCP PAYPVKVRVS YQKLLKCYVL NELHHRPPKA QKKKHLFRSL
0501: AATKFFQSTE LDWYLTEHPD PNNENMVGYN NKKCWPRDAR MRLMKHDVNL GRSVFWDMKN RLPRSITTLE WENGFVSVYS KDNPNLLFSM CGFEVRILPK
0601: IRMTQEAFSN TRDGVWNLQN EQTKERTAVA FLRVDDEHMK VFENRARQIL MSSGSTTFTK IVNKWNTALI GLMTYFREAT VHTQELLDLL VKCENKIQTR
0701: IKIGLNSKMP SRFPPVIFYT PKEIGGLGML SMGHILIPQS DLRYSKQTDV GVTHFRSGMS HEEDQLIPNL YRYIQPWESE FIDSQRVWAE YALKRQEAQA
0801: QNRRLTLEDL EDSWDRGIPR INTLFQKDRH TLAYDKGWRV RTDFKQYQVL KQNPFWWTHQ RHDGKLWNLN NYRTDVIQAL GGVEGILEHT LFKGTYFPTW
0901: EGLFWEKASG FEESMKYKKL TNAQRSGLNQ IPNRRFTLWW SPTINRANVY VGFQVQLDLT GIFMHGKIPT LKISLIQIFR AHLWQKIHES VVMDLCQVLD
1001: QELDALEIET VQKETIHPRK SYKMNSSCAD VLLFAAHKWP MSKPSLVAES KDVFDQKASN KYWIDVQLRW GDYDSHDIER YTRAKFMDYT TDNMSIYPSP
1101: TGVMIGLDLA YNLHSAFGNW FPGSKPLLAQ AMNKIMKSNP ALYVLRERIR KGLQLYSSEP TEPYLSSQNY GEIFSNQIIW FVDDTNVYRV TIHKTFEGNL
1201: TTKPINGAIF IFNPRTGQLF LKVIHTSVWA GQKRLGQLAK WKTAEEVAAL VRSLPVEEQP KQVIVTRKGM LDPLEVHLLD FPNIVIKGSE LQLPFQACLK
1301: IEKFGDLILK ATEPQMVLFN IYDDWLKSIS SYTAFSRLIL ILRALHVNNE KAKMLLKPDK SVVTEPHHIW PSLTDDQWMK VEVALRDLIL SDYAKKNNVN
1401: TSALTQSEIR DIILGAEITP PSQQRQQIAE IEKQAKEASQ INAVTTRTTN VHGEELIVTT VSPYEQTAFG SKTDWRVRAI SATNLYLRVN HIYVNSDDIK
1501: ETGYTYIMPK NVLKKFICIA DLRTQIAGYL YGISPPDNPQ VKEIRCVVMV PQWGSHQHLN LPSALPEHEF LNDLEPLGWL HTQPNELPQL SPQDVTSHSR
1601: ILENNKQWDG EKCIILTCSF TPGSCSLTSY KLTQTGYEWG RLNKDTGGNP HGYLPTHYEK VQMLLSDRFL GFYMVPENGP WNYNFMGVKH TVGMKYSVKL
1701: GSPKEYYHEE HRPTHFLEFS NMEEADIAEG DREDTFA
0101: SKKFRHDKRV YLGALKFVPH AVFKLLENMP MPWEQVRDVK VLYHITGAIT FVNEIPWVVE PIYMAQWGTM WIMMRREKRD RRHFKRMRFP PFDDEEPPLD
0201: YADNLLDVDP LEPIQLELDE EEDSAVHTWF YDHKPLVKTK LINGPSYRKW NLSLPIMATL HRLAGQLLSD LIDRNYFYLF DMPSFFTAKA LNMCIPGGPK
0301: FEPLYRDMEK GDEDWNEFND INKLIIRSPL RTEYRIGFPH LYNNRPRKVK LCVYHSPMVM YIKTEDPDLP AFYYDPLLHP ISNTNKERRE RNVFEDDGED
0401: EFILPEGVEP LLKDTHLYTD TTAAGISLLF APRPFNMRSG RTRRSEDIPL VSEWFKEHCP PAYPVKVRVS YQKLLKCYVL NELHHRPPKA QKKKHLFRSL
0501: AATKFFQSTE LDWYLTEHPD PNNENMVGYN NKKCWPRDAR MRLMKHDVNL GRSVFWDMKN RLPRSITTLE WENGFVSVYS KDNPNLLFSM CGFEVRILPK
0601: IRMTQEAFSN TRDGVWNLQN EQTKERTAVA FLRVDDEHMK VFENRARQIL MSSGSTTFTK IVNKWNTALI GLMTYFREAT VHTQELLDLL VKCENKIQTR
0701: IKIGLNSKMP SRFPPVIFYT PKEIGGLGML SMGHILIPQS DLRYSKQTDV GVTHFRSGMS HEEDQLIPNL YRYIQPWESE FIDSQRVWAE YALKRQEAQA
0801: QNRRLTLEDL EDSWDRGIPR INTLFQKDRH TLAYDKGWRV RTDFKQYQVL KQNPFWWTHQ RHDGKLWNLN NYRTDVIQAL GGVEGILEHT LFKGTYFPTW
0901: EGLFWEKASG FEESMKYKKL TNAQRSGLNQ IPNRRFTLWW SPTINRANVY VGFQVQLDLT GIFMHGKIPT LKISLIQIFR AHLWQKIHES VVMDLCQVLD
1001: QELDALEIET VQKETIHPRK SYKMNSSCAD VLLFAAHKWP MSKPSLVAES KDVFDQKASN KYWIDVQLRW GDYDSHDIER YTRAKFMDYT TDNMSIYPSP
1101: TGVMIGLDLA YNLHSAFGNW FPGSKPLLAQ AMNKIMKSNP ALYVLRERIR KGLQLYSSEP TEPYLSSQNY GEIFSNQIIW FVDDTNVYRV TIHKTFEGNL
1201: TTKPINGAIF IFNPRTGQLF LKVIHTSVWA GQKRLGQLAK WKTAEEVAAL VRSLPVEEQP KQVIVTRKGM LDPLEVHLLD FPNIVIKGSE LQLPFQACLK
1301: IEKFGDLILK ATEPQMVLFN IYDDWLKSIS SYTAFSRLIL ILRALHVNNE KAKMLLKPDK SVVTEPHHIW PSLTDDQWMK VEVALRDLIL SDYAKKNNVN
1401: TSALTQSEIR DIILGAEITP PSQQRQQIAE IEKQAKEASQ INAVTTRTTN VHGEELIVTT VSPYEQTAFG SKTDWRVRAI SATNLYLRVN HIYVNSDDIK
1501: ETGYTYIMPK NVLKKFICIA DLRTQIAGYL YGISPPDNPQ VKEIRCVVMV PQWGSHQHLN LPSALPEHEF LNDLEPLGWL HTQPNELPQL SPQDVTSHSR
1601: ILENNKQWDG EKCIILTCSF TPGSCSLTSY KLTQTGYEWG RLNKDTGGNP HGYLPTHYEK VQMLLSDRFL GFYMVPENGP WNYNFMGVKH TVGMKYSVKL
1701: GSPKEYYHEE HRPTHFLEFS NMEEADIAEG DREDTFA
0001: MWNNNDGMPL APPGTGGSMM PPPPAAHPSY TALPPPSNPT PPVEPTPEEA EAKLEEKARK WMQLNSKRYG DKRKFGFVET QKEDMPPEHV RKIIRDHGDM
0101: SSKKFRHDKR VYLGALKFVP HAVFKLLENM PMPWEQVRDV KVLYHITGAI TFVNEIPWVV EPIYMAQWGT MWIMMRREKR DRRHFKRMRF PPFDDEEPPL
0201: DYADNLLDVD PLEPIQLELD EEEDSAVHTW FYDHKPLVKT KLINGPSYRR WNLSLPIMAT LHRLAGQLLS DLIDRNYFYL FDMPSFFTAK ALNMCIPGGP
0301: KFEPLYRDME KGDEDWNEFN DINKLIIRSP LRTEYRIAFP HLYNNRPRKV KLCVYHSPMI MYIKTEDPDL PAFYYDPLIH PISNTNKEKR ERKVYDDEDD
0401: FALPEGVEPL LRDTQLYTDT TAAGISLLFA PRPFNMRSGR TRRAEDIPLV SEWFKEHCPP AYPVKVRVSY QKLLKCYVLN ELHHRPPKAQ KKKHLFRSLA
0501: ATKFFQSTEL DWVEVGLQVC RQGYNMLNLL IHRKNLNYLH LDYNFNLKPV KTLTTKERKK SRFGNAFHLC REILRLTKLV VDANVQFRLG NVDAFQLADG
0601: LQYIFSHVGQ LTGMYRYKYR LMRQIRMCKD LKHLIYYRFN TGPVGKGPGC GFWAPMWRVW LFFLRGIVPL LERWLGNLLA RQFEGRHSKG VAKTVTKQRV
0701: ESHFDLELRA AVMHDVLDAM PEGIKQNKAR TILQHLSEAW RCWKANIPWK VPGLPVPIEN MILRYVKSKA DWWTNVAHYN RERIRRGATV DKTVCRKNLG
0801: RLTRLWLKAE QERQHNYLKD GPYVTPEEAL AIYTTTVHWL ESRKFSPIPF PPLSYKHDTK LLILALERLK ESYSVAVRLN QQQREELGLI EQAYDNPHEA
0901: LSRIKRHLLT QRGFKEVGIE FMDLYSYLIP VYEIEPLEKI TDAYLDQYLW YEGDKRHLFP NWIKPADSEP PPLLVYKWCQ GINNLQGIWD TGDGQCVVML
1001: QTKFEKFFEK IDLTMLNRLL RLVLDHNIAD YVSAKNNVVL SYKDMSHTNS YGLIRGLQFA SFVVQFYGLL LDLLLLGLTR ASEIAGPPQM PNEFMTFWDT
1101: KVETRHPIRL YSRYIDKVHI MFKFTHEEAR DLIQRYLTEH PDPNNENMVG YNNKKCWPRD ARMRLMKHDV NLGRSVFWDM KNRLPRSITT LEWENGFVSV
1201: YSKDNPNLLF SMCGFEVRIL PKIRMTQEAF SNTKDGVWNL QNEQTKERTA VAFLRVDDEH MKVFENRVRQ ILMSSGSTTF TKIVNKWNTA LIGLMTYFRE
1301: ATVHTQELLD LLVKCENKIQ TRIKIGLNSK MPSRFPPVIF YTPKEIGGLG MLSMGHILIP QSDLRYSKQT DVGVTHFRSG MSHEEDQLIP NLYRYIQPWE
1401: SEFIDSQRVW AEYALKRQEA QAQNRRLTLE DLEDSWDRGI PRINTLFQKD RHTLAYDKGW RVRTDFKQYQ VLKQNPFWWT HQRHDGKLWN LNNYRTDVIQ
1501: ALGGVEGILE HTLFKGTYFP TWEGLFWEKA SGFEESMKYK KLTNAQRSGL NQIPNRRFTL WWSPTINRAN VYVGFQVQLD LTGIFMHGKI PTLKISLIQI
1601: FRAHLWQKIH ESVVMDLCQV LDQELDALEI ETVQKETIHP RKSYKMNSSC ADVLLFAAHK WPMSKPSLVA ESKDMFDQKA SNKYWIDVQL RWGDYDSHDI
1701: ERYTRAKFMD YTTDNMSIYP SPTGVMIGLD LAYNLHSAFG NWFPGSKPLL AQAMNKIMKS NPALYVLRER IRKGLQLYSS EPTEPYLSSQ NYGEIFSNQI
1801: IWFVDDTNVY RVTIHKTFEG NLTTKPINGA IFIFNPRTGQ LFLKVIHTSV WAGQKRLGQL AKWKTAEEVA ALVRSLPVEE QPKQIIVTRK GMLDPLEVHL
1901: LDFPNIVIKG SELQLPFQAC LKIEKFGDLI LKATEPQMVL FNIYDDWLKS ISSYTAFSRL ILILRALHVN NEKAKMLLKP DKSVVTEPHH IWPSLTDDQW
2001: MKVEVALRDL ILSDYAKKNN VNTSALTQSE IRDIILGAEI TPPSQQRQQI AEIEKQAKEA SQLTAVTTRT TNVHGDELIV TTTSPYEQSA FGSKTDWRVR
2101: AISATNLYLR VNHIYVNSDD IKETGYTYIM PKNILKKFIC VADLRTQIAG YLYGISPPDN PQVKEIRCVV MVPQWGNHQL VHLPSSLPEH DFLNDLEPLG
2201: WLHTQPNELP QLSPQDVTSH SRILENNKQW DGEKCIILTC SFTPGSCSLT SYKLTQTGYE WGRLNKDNGS NPHGYLPTHY EKVQMLLSDR FLGFYMVPES
2301: GPWNYSFTGV KHTLSMKYSV KLGSPKEFYH EEHRPTHFLE FSNMEEADIT EGDREDTFT
0101: SSKKFRHDKR VYLGALKFVP HAVFKLLENM PMPWEQVRDV KVLYHITGAI TFVNEIPWVV EPIYMAQWGT MWIMMRREKR DRRHFKRMRF PPFDDEEPPL
0201: DYADNLLDVD PLEPIQLELD EEEDSAVHTW FYDHKPLVKT KLINGPSYRR WNLSLPIMAT LHRLAGQLLS DLIDRNYFYL FDMPSFFTAK ALNMCIPGGP
0301: KFEPLYRDME KGDEDWNEFN DINKLIIRSP LRTEYRIAFP HLYNNRPRKV KLCVYHSPMI MYIKTEDPDL PAFYYDPLIH PISNTNKEKR ERKVYDDEDD
0401: FALPEGVEPL LRDTQLYTDT TAAGISLLFA PRPFNMRSGR TRRAEDIPLV SEWFKEHCPP AYPVKVRVSY QKLLKCYVLN ELHHRPPKAQ KKKHLFRSLA
0501: ATKFFQSTEL DWVEVGLQVC RQGYNMLNLL IHRKNLNYLH LDYNFNLKPV KTLTTKERKK SRFGNAFHLC REILRLTKLV VDANVQFRLG NVDAFQLADG
0601: LQYIFSHVGQ LTGMYRYKYR LMRQIRMCKD LKHLIYYRFN TGPVGKGPGC GFWAPMWRVW LFFLRGIVPL LERWLGNLLA RQFEGRHSKG VAKTVTKQRV
0701: ESHFDLELRA AVMHDVLDAM PEGIKQNKAR TILQHLSEAW RCWKANIPWK VPGLPVPIEN MILRYVKSKA DWWTNVAHYN RERIRRGATV DKTVCRKNLG
0801: RLTRLWLKAE QERQHNYLKD GPYVTPEEAL AIYTTTVHWL ESRKFSPIPF PPLSYKHDTK LLILALERLK ESYSVAVRLN QQQREELGLI EQAYDNPHEA
0901: LSRIKRHLLT QRGFKEVGIE FMDLYSYLIP VYEIEPLEKI TDAYLDQYLW YEGDKRHLFP NWIKPADSEP PPLLVYKWCQ GINNLQGIWD TGDGQCVVML
1001: QTKFEKFFEK IDLTMLNRLL RLVLDHNIAD YVSAKNNVVL SYKDMSHTNS YGLIRGLQFA SFVVQFYGLL LDLLLLGLTR ASEIAGPPQM PNEFMTFWDT
1101: KVETRHPIRL YSRYIDKVHI MFKFTHEEAR DLIQRYLTEH PDPNNENMVG YNNKKCWPRD ARMRLMKHDV NLGRSVFWDM KNRLPRSITT LEWENGFVSV
1201: YSKDNPNLLF SMCGFEVRIL PKIRMTQEAF SNTKDGVWNL QNEQTKERTA VAFLRVDDEH MKVFENRVRQ ILMSSGSTTF TKIVNKWNTA LIGLMTYFRE
1301: ATVHTQELLD LLVKCENKIQ TRIKIGLNSK MPSRFPPVIF YTPKEIGGLG MLSMGHILIP QSDLRYSKQT DVGVTHFRSG MSHEEDQLIP NLYRYIQPWE
1401: SEFIDSQRVW AEYALKRQEA QAQNRRLTLE DLEDSWDRGI PRINTLFQKD RHTLAYDKGW RVRTDFKQYQ VLKQNPFWWT HQRHDGKLWN LNNYRTDVIQ
1501: ALGGVEGILE HTLFKGTYFP TWEGLFWEKA SGFEESMKYK KLTNAQRSGL NQIPNRRFTL WWSPTINRAN VYVGFQVQLD LTGIFMHGKI PTLKISLIQI
1601: FRAHLWQKIH ESVVMDLCQV LDQELDALEI ETVQKETIHP RKSYKMNSSC ADVLLFAAHK WPMSKPSLVA ESKDMFDQKA SNKYWIDVQL RWGDYDSHDI
1701: ERYTRAKFMD YTTDNMSIYP SPTGVMIGLD LAYNLHSAFG NWFPGSKPLL AQAMNKIMKS NPALYVLRER IRKGLQLYSS EPTEPYLSSQ NYGEIFSNQI
1801: IWFVDDTNVY RVTIHKTFEG NLTTKPINGA IFIFNPRTGQ LFLKVIHTSV WAGQKRLGQL AKWKTAEEVA ALVRSLPVEE QPKQIIVTRK GMLDPLEVHL
1901: LDFPNIVIKG SELQLPFQAC LKIEKFGDLI LKATEPQMVL FNIYDDWLKS ISSYTAFSRL ILILRALHVN NEKAKMLLKP DKSVVTEPHH IWPSLTDDQW
2001: MKVEVALRDL ILSDYAKKNN VNTSALTQSE IRDIILGAEI TPPSQQRQQI AEIEKQAKEA SQLTAVTTRT TNVHGDELIV TTTSPYEQSA FGSKTDWRVR
2101: AISATNLYLR VNHIYVNSDD IKETGYTYIM PKNILKKFIC VADLRTQIAG YLYGISPPDN PQVKEIRCVV MVPQWGNHQL VHLPSSLPEH DFLNDLEPLG
2201: WLHTQPNELP QLSPQDVTSH SRILENNKQW DGEKCIILTC SFTPGSCSLT SYKLTQTGYE WGRLNKDNGS NPHGYLPTHY EKVQMLLSDR FLGFYMVPES
2301: GPWNYSFTGV KHTLSMKYSV KLGSPKEFYH EEHRPTHFLE FSNMEEADIT EGDREDTFT
Arabidopsis Description
PRP8ASUS2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7J7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.