CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, endoplasmic reticulum

Predictor Summary:

nucleus 2
extracellular 2
golgi 3
plasma membrane 2
endoplasmic reticulum 3
vacuole 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX91498	Canola	endoplasmic reticulum, golgi, plasma membrane	95.76	95.63
CDX87291	Canola	cytosol, golgi	2.67	72.22
CDY58771	Canola	cytosol, golgi	2.67	72.22
CDX74882	Canola	nucleus	94.19	67.12
CDX74881	Canola	nucleus	9.77	57.66
CDX91500	Canola	cytosol	9.71	55.47
CDY66547	Canola	cytosol	13.81	53.72
CDY51887	Canola	cytosol	61.79	52.04
CDX78961	Canola	cytosol	61.72	50.99
CDY57684	Canola	cytosol	1.64	45.28
CDY65286	Canola	nucleus	5.33	41.27
CDY16708	Canola	nucleus	2.39	40.23
CDY17826	Canola	cytosol, nucleus, plastid	0.27	4.08
CDX91499	Canola	cytosol	0.21	0.51
HORVU7Hr1G073700.1	Barley	cytosol	0.0	0.0
CDY68930	Canola	nucleus	0.0	0.0
CDY67065	Canola	cytosol	0.0	0.0
CDY35524	Canola	cytosol	0.0	0.0
CDY19067	Canola	extracellular, mitochondrion	0.0	0.0

Protein Annotations

Gene3D:1.20.58.1750	Gene3D:1.20.80.40	MapMan:16.4.1.4.4	Gene3D:3.30.420.230	Gene3D:3.40.140.10	Gene3D:3.90.1570.40
GO:A0A078ICU7	UniProt:A0A078ICU7	EnsemblPlants:CDY47696	ProteinID:CDY47696	ProteinID:CDY47696.1	ncoils:Coil
GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0017070	GO:GO:0030623	EnsemblPlantsGene:GSBRNA2T00087958001	PFAM:PF08083
PFAM:PF08084	PFAM:PF10596	PFAM:PF10597	PFAM:PF10598	PFAM:PF12134	InterPro:PROCN
InterPro:PROCT	InterPro:PRP8	InterPro:PRP8_domainIV	PANTHER:PTHR11140	InterPro:Prp8_U5-snRNA-bd	InterPro:Prp8_U6-snRNA-bd
InterPro:RNaseH-like_sf	InterPro:RRM_spliceosomal_PrP8	SUPFAM:SSF53098	SignalP:SignalP-noTM	UniParc:UPI0004EEA432	SEG:seg

Description

BnaCnng15380DBnaCnng15380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ICU7]

Coordinates

chrLK032730:-:157523..162534

Molecular Weight (calculated)

169701.0 Da

IEP (calculated)

9.308

GRAVY (calculated)

-0.463

Length

1463 amino acids

Sequence
(BLAST)

0001: MWRVWLFFLR GIVPLLERWL GNLLGRQFEG RHSKGVAKTV TKQRVESHFD LELRAAVMHD VLDAMPQGIR KNKAKTILQH LSEAWRCWKA NIAWKVPGLP
0101: VPVENMILRY VKSKADWWTN VAHYNRERIR RGATVDKTVC KKNLGRLTRL WLKAEQERQH NYLKDGPYVN SEEAVSIHTT TFHWLESRKF SPIPFPPLSY
0201: KHDTKILILA LERLKESYGG ARNMKEVGIQ FMDLYSYLIP VYEIDPLEKI TDAYLDQYLW YEGDKRGLFS NWIKPADSEP PPLLVYKWCQ GINNLQGVWD
0301: TSDGQCVVML QTKFEKLFEK IDLTMLNRLL RLILDHNLAD YMCAKNSVLL AYKDMSHTNS HGLIRGLQFA SFVVQFYGLS LDLLLLGLTR ASEIAGPPQT
0401: PNEFMTFCDT KVETCHPIRM YARYIDRVHI MFRFTHEEAR DLIQRYLMEH PDPNNENMVG YNNKKCWPRD ARMRLMKHDV NLGRSVFWGI KNRLPRSITT
0501: LEWENGFVSV YSKDNPNLLF SMCGFEVRIL PKIRTTQSNT KDGVWNLQNE HTKERTAAAF LRVDDEHMKS FENRVRQILM SSGSTTFTNK IKIGLNSKMP
0601: SRFPPVVFYA PKELGGLGML SMGHSLIPQS DLKHSKQTDV GVTHFRSGMS HEEDQLIPNL YRYIQPWESE FIDSQRVWAK YALKRQEAQA KNRRLTLEDL
0701: EDSWDRGIPR INTLFQKDRH TLAYDKGRRV RTEFKQYQVL KQNPFWWTHQ RHDGKLWNLN NYGTDVIQAL GGVEGILEHT LFKGTYFPTW EGLFWEKASG
0801: FEESMKYKKL TNAQRSGLNQ IPNRRFTLWW SPTINRANVY LGFQIHESVV MDLCHELEAL EIETVQKETI HPRKSYKMNS SCADVLLFAS GKWPMSKPSL
0901: LAESKDAFDQ KASNKYWIDV QLRWGGGDYD SHDIERYARA KFMDYTADSM SIYPSPTGVV IGIDLAYNLH SAFGNWFPGS KPLLTQAMNK IMKANPALPA
1001: LRDRIRKGLQ LYSSEPTEPY LSSQNYGEIF NNPIKWFVDD TNKRLGQLAK WKTAEEVATL VRSLPVEEQP KQIIVTRKGM LDPFEVHLLD FPNVVIKGSE
1101: LQLPFQACLK IEKFGNMILK ATEPKMVLFN IYDDWLKSVS SYTCFSRLIL ILRALHANNE KAKMLLRPDK SVVTEPHHMW PSLTGDQWMK VEVALRDLIL
1201: SDYAKKNNVN TSALTQSEMR DIIVGAEITP PSQQRQQIAE IEKQASQAVA VTTKTRNVHG DELIVSTVTP YEQAAFNSKT DWRVRAISAT NLYLRVNHIY
1301: VNSDNVNESG YTYNMPKNLL KRFICVADLR TQIAGYLYGV SAPDNPRVKE IRCVVMVPQR ESSQDKLTQS DGRSDPRGYV PTHYEKVQML LSVRFLGFYM
1401: VPENGSWNYN FMGTKHAVDM KYSVRLGYPK EYFDVEHRPT HFLEFSSMED VEMAEGDRED IFG

Best Arabidopsis Sequence Match ( AT1G80070.1 )
(BLAST)

0001: MWNNNDGMPL APPGTGGSMM PPPPAAHPSY TALPPPSNPT PPVEPTPEEA EAKLEEKARK WMQLNSKRYG DKRKFGFVET QKEDMPPEHV RKIIRDHGDM
0101: SSKKFRHDKR VYLGALKFVP HAVFKLLENM PMPWEQVRDV KVLYHITGAI TFVNEIPWVV EPIYMAQWGT MWIMMRREKR DRRHFKRMRF PPFDDEEPPL
0201: DYADNLLDVD PLEPIQLELD EEEDSAVHTW FYDHKPLVKT KLINGPSYRR WNLSLPIMAT LHRLAGQLLS DLIDRNYFYL FDMPSFFTAK ALNMCIPGGP
0301: KFEPLYRDME KGDEDWNEFN DINKLIIRSP LRTEYRIAFP HLYNNRPRKV KLCVYHSPMI MYIKTEDPDL PAFYYDPLIH PISNTNKEKR ERKVYDDEDD
0401: FALPEGVEPL LRDTQLYTDT TAAGISLLFA PRPFNMRSGR TRRAEDIPLV SEWFKEHCPP AYPVKVRVSY QKLLKCYVLN ELHHRPPKAQ KKKHLFRSLA
0501: ATKFFQSTEL DWVEVGLQVC RQGYNMLNLL IHRKNLNYLH LDYNFNLKPV KTLTTKERKK SRFGNAFHLC REILRLTKLV VDANVQFRLG NVDAFQLADG
0601: LQYIFSHVGQ LTGMYRYKYR LMRQIRMCKD LKHLIYYRFN TGPVGKGPGC GFWAPMWRVW LFFLRGIVPL LERWLGNLLA RQFEGRHSKG VAKTVTKQRV
0701: ESHFDLELRA AVMHDVLDAM PEGIKQNKAR TILQHLSEAW RCWKANIPWK VPGLPVPIEN MILRYVKSKA DWWTNVAHYN RERIRRGATV DKTVCRKNLG
0801: RLTRLWLKAE QERQHNYLKD GPYVTPEEAL AIYTTTVHWL ESRKFSPIPF PPLSYKHDTK LLILALERLK ESYSVAVRLN QQQREELGLI EQAYDNPHEA
0901: LSRIKRHLLT QRGFKEVGIE FMDLYSYLIP VYEIEPLEKI TDAYLDQYLW YEGDKRHLFP NWIKPADSEP PPLLVYKWCQ GINNLQGIWD TGDGQCVVML
1001: QTKFEKFFEK IDLTMLNRLL RLVLDHNIAD YVSAKNNVVL SYKDMSHTNS YGLIRGLQFA SFVVQFYGLL LDLLLLGLTR ASEIAGPPQM PNEFMTFWDT
1101: KVETRHPIRL YSRYIDKVHI MFKFTHEEAR DLIQRYLTEH PDPNNENMVG YNNKKCWPRD ARMRLMKHDV NLGRSVFWDM KNRLPRSITT LEWENGFVSV
1201: YSKDNPNLLF SMCGFEVRIL PKIRMTQEAF SNTKDGVWNL QNEQTKERTA VAFLRVDDEH MKVFENRVRQ ILMSSGSTTF TKIVNKWNTA LIGLMTYFRE
1301: ATVHTQELLD LLVKCENKIQ TRIKIGLNSK MPSRFPPVIF YTPKEIGGLG MLSMGHILIP QSDLRYSKQT DVGVTHFRSG MSHEEDQLIP NLYRYIQPWE
1401: SEFIDSQRVW AEYALKRQEA QAQNRRLTLE DLEDSWDRGI PRINTLFQKD RHTLAYDKGW RVRTDFKQYQ VLKQNPFWWT HQRHDGKLWN LNNYRTDVIQ
1501: ALGGVEGILE HTLFKGTYFP TWEGLFWEKA SGFEESMKYK KLTNAQRSGL NQIPNRRFTL WWSPTINRAN VYVGFQVQLD LTGIFMHGKI PTLKISLIQI
1601: FRAHLWQKIH ESVVMDLCQV LDQELDALEI ETVQKETIHP RKSYKMNSSC ADVLLFAAHK WPMSKPSLVA ESKDMFDQKA SNKYWIDVQL RWGDYDSHDI
1701: ERYTRAKFMD YTTDNMSIYP SPTGVMIGLD LAYNLHSAFG NWFPGSKPLL AQAMNKIMKS NPALYVLRER IRKGLQLYSS EPTEPYLSSQ NYGEIFSNQI
1801: IWFVDDTNVY RVTIHKTFEG NLTTKPINGA IFIFNPRTGQ LFLKVIHTSV WAGQKRLGQL AKWKTAEEVA ALVRSLPVEE QPKQIIVTRK GMLDPLEVHL
1901: LDFPNIVIKG SELQLPFQAC LKIEKFGDLI LKATEPQMVL FNIYDDWLKS ISSYTAFSRL ILILRALHVN NEKAKMLLKP DKSVVTEPHH IWPSLTDDQW
2001: MKVEVALRDL ILSDYAKKNN VNTSALTQSE IRDIILGAEI TPPSQQRQQI AEIEKQAKEA SQLTAVTTRT TNVHGDELIV TTTSPYEQSA FGSKTDWRVR
2101: AISATNLYLR VNHIYVNSDD IKETGYTYIM PKNILKKFIC VADLRTQIAG YLYGISPPDN PQVKEIRCVV MVPQWGNHQL VHLPSSLPEH DFLNDLEPLG
2201: WLHTQPNELP QLSPQDVTSH SRILENNKQW DGEKCIILTC SFTPGSCSLT SYKLTQTGYE WGRLNKDNGS NPHGYLPTHY EKVQMLLSDR FLGFYMVPES
2301: GPWNYSFTGV KHTLSMKYSV KLGSPKEFYH EEHRPTHFLE FSNMEEADIT EGDREDTFT

Arabidopsis Description

PRP8ASUS2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7J7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.