Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 2
- endoplasmic reticulum 3
- vacuole 2
- plasma membrane 3
- golgi 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47696 | Canola | endoplasmic reticulum, golgi | 95.63 | 95.76 |
| CDX87291 | Canola | cytosol, golgi | 2.73 | 74.07 |
| CDY58771 | Canola | cytosol, golgi | 2.73 | 74.07 |
| CDX74882 | Canola | nucleus | 95.7 | 68.29 |
| CDX74881 | Canola | nucleus | 10.24 | 60.48 |
| CDX91500 | Canola | cytosol | 10.1 | 57.81 |
| CDY66547 | Canola | cytosol | 13.86 | 53.99 |
| CDY51887 | Canola | cytosol | 63.28 | 53.37 |
| CDX78961 | Canola | cytosol | 63.14 | 52.23 |
| CDY57684 | Canola | cytosol | 1.64 | 45.28 |
| CDY16708 | Canola | nucleus | 2.46 | 41.38 |
| CDY65286 | Canola | nucleus | 5.32 | 41.27 |
| CDY17826 | Canola | cytosol, nucleus, plastid | 0.27 | 4.08 |
| CDX91499 | Canola | cytosol | 0.2 | 0.51 |
| HORVU7Hr1G073700.1 | Barley | cytosol | 0.0 | 0.0 |
| CDY68930 | Canola | nucleus | 0.0 | 0.0 |
| CDY67065 | Canola | cytosol | 0.0 | 0.0 |
| CDY35524 | Canola | cytosol | 0.0 | 0.0 |
| CDY19067 | Canola | extracellular, mitochondrion | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.58.1750 | Gene3D:1.20.80.40 | MapMan:16.4.1.4.4 | Gene3D:3.30.420.230 | Gene3D:3.40.140.10 | Gene3D:3.90.1570.40 |
| GO:A0A078DWA8 | EnsemblPlants:CDX91498 | ProteinID:CDX91498 | ProteinID:CDX91498.1 | ncoils:Coil | GO:GO:0000398 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0017070 | GO:GO:0030623 | EnsemblPlantsGene:GSBRNA2T00152859001 | PFAM:PF08083 | PFAM:PF08084 |
| PFAM:PF10596 | PFAM:PF10597 | PFAM:PF10598 | PFAM:PF12134 | InterPro:PROCN | InterPro:PROCT |
| InterPro:PRP8 | InterPro:PRP8_domainIV | PANTHER:PTHR11140 | InterPro:Prp8_U5-snRNA-bd | InterPro:Prp8_U6-snRNA-bd | InterPro:RNaseH-like_sf |
| InterPro:RRM_spliceosomal_PrP8 | SUPFAM:SSF53098 | SignalP:SignalP-noTM | UniParc:UPI0004EF0ADF | SEG:seg | : |
Description
BnaC04g06520D
Coordinates
chrLK031867:-:1436280..1441385
Molecular Weight (calculated)
170153.0 Da
IEP (calculated)
9.186
GRAVY (calculated)
-0.435
Length
1465 amino acids
Sequence
(BLAST)
(BLAST)
0001: MWRVWLFFLR GIVPLLERWL GNLLGRQFEG RHSKGVAKTV TKQRVESHFD LELRAAVMHD VLDAMPEGIR KNKAKTILQH LSEAWRCWKA NIAWKVPGLP
0101: VPVENMILRY VKSKADWWTN VAHYNRERIR RGATVDKTVC KKNLGRLTRL WLKAEQERQH NYLKDGPYVT SEEAVSIHRT TFHWLESRMF SPIPFPPLSY
0201: KHDTKILILA LERLKESYGG ARNMKEVGIQ FMDLYSYLIP VYEIDPLEKI TDAYLDQYLW YEGDKRGLFP NWIKPADSEP PPLLVYKWCQ GVNNLQGVWD
0301: TSDGQCVVML QTKFEKLFEK IDITMLNRLL RLILDHNLAD YMCAKNNVLL AYKDMSHTNS HGLIRGLQFA SFVVQFYGLS LDLVLLGLTR ATEIAGPPQT
0401: PNEFMTFWDT KVETCHPIRI YARYIDRVHI MFKFTHQEAR DLIQRYLTEH PDPNNENMVG YNNKKCWPRD ARMRLMKHDV NLGRSVFWGI KNRLPRSITT
0501: LEWENGFVSV YSKDNPNLLF SMCGFEVRIL PKIRMTQSNT KDGVWNLQNE QTKERTAAAF LRVDDEHMKA FENRVRQILM SSGSTTFTKI VNKIKIGLNS
0601: KMPSRFPPVV FYAPKELGGL GMLSMGHILI PQSDLKHSKQ TDVGVTHFRS GMSHEEDQLI PNLYRYIQPW ESEFIDSQRV WAEYALKRQE AQVQNRRLTL
0701: EDLEDSWDRG IPRINTLFQK DRHTLAYDKG WRVRTEFKQY QVLKQNPFWW THQRHDGKLW NLNNYRTDVI QALGGVEGIL EHTLFKGTYF PTWEGLFWEK
0801: ASGFEESMKY KKLTNAQRSG LNQIPNRRFT LWWSPTINRA NVYLGFQIHE SVVMDLCQVL DHELEALEIE TVQKETIHPR KSYKMNSSCA DVLLFASGKW
0901: PMSKPSLLAE SKDVFDQKAS NKYWIDVQLR WGDYDSHDIE RYTRAKFMDY TADSMSIYPS PTGVVIGIDL AYNLHSAFGN WFPGSKPLVT QAMNKIMKAN
1001: PALHALRDRI KKGLQLYSSA PTEPYLSSQN YGEIFNNQIK WFVDDTNKRL GQLAKWKTAE EVAALVRSLP VEEQPKQIIV TRKGMLDPLE VHLLDFPNVV
1101: IKGSELQLPF QACLKIETFG DMILKATEPK MVLFNIYDDW LKSVSSYTCF SRLILILRAL HVNNDKAKML LRPDKSVVTE PHHIWPSLTD DQWMKVEVAL
1201: RDLILSDYAK KNNVSTSALT QSEMRDIILG ADITPPSQQR QQIAEIEKQA SQAIAVTTKT RNVHGDELIV STVTPYEQAA FSSKTDWRVR AISATNLYLR
1301: VNHIYVNSDN INESGYTYIM PKNLLKRFIC IADLRTQIAG YLYGISPPDN PRVKEIRCVV MVPQRGSSQA DAGGRSDPRG YVPTHYEKVQ MLLSDRFLGF
1401: YMVPENGSWN YNFMGTKHAV DMKYSVRLGY PKEYFDVEHR PTHFLEFSSM EDVEMAEGDR EDKFG
0101: VPVENMILRY VKSKADWWTN VAHYNRERIR RGATVDKTVC KKNLGRLTRL WLKAEQERQH NYLKDGPYVT SEEAVSIHRT TFHWLESRMF SPIPFPPLSY
0201: KHDTKILILA LERLKESYGG ARNMKEVGIQ FMDLYSYLIP VYEIDPLEKI TDAYLDQYLW YEGDKRGLFP NWIKPADSEP PPLLVYKWCQ GVNNLQGVWD
0301: TSDGQCVVML QTKFEKLFEK IDITMLNRLL RLILDHNLAD YMCAKNNVLL AYKDMSHTNS HGLIRGLQFA SFVVQFYGLS LDLVLLGLTR ATEIAGPPQT
0401: PNEFMTFWDT KVETCHPIRI YARYIDRVHI MFKFTHQEAR DLIQRYLTEH PDPNNENMVG YNNKKCWPRD ARMRLMKHDV NLGRSVFWGI KNRLPRSITT
0501: LEWENGFVSV YSKDNPNLLF SMCGFEVRIL PKIRMTQSNT KDGVWNLQNE QTKERTAAAF LRVDDEHMKA FENRVRQILM SSGSTTFTKI VNKIKIGLNS
0601: KMPSRFPPVV FYAPKELGGL GMLSMGHILI PQSDLKHSKQ TDVGVTHFRS GMSHEEDQLI PNLYRYIQPW ESEFIDSQRV WAEYALKRQE AQVQNRRLTL
0701: EDLEDSWDRG IPRINTLFQK DRHTLAYDKG WRVRTEFKQY QVLKQNPFWW THQRHDGKLW NLNNYRTDVI QALGGVEGIL EHTLFKGTYF PTWEGLFWEK
0801: ASGFEESMKY KKLTNAQRSG LNQIPNRRFT LWWSPTINRA NVYLGFQIHE SVVMDLCQVL DHELEALEIE TVQKETIHPR KSYKMNSSCA DVLLFASGKW
0901: PMSKPSLLAE SKDVFDQKAS NKYWIDVQLR WGDYDSHDIE RYTRAKFMDY TADSMSIYPS PTGVVIGIDL AYNLHSAFGN WFPGSKPLVT QAMNKIMKAN
1001: PALHALRDRI KKGLQLYSSA PTEPYLSSQN YGEIFNNQIK WFVDDTNKRL GQLAKWKTAE EVAALVRSLP VEEQPKQIIV TRKGMLDPLE VHLLDFPNVV
1101: IKGSELQLPF QACLKIETFG DMILKATEPK MVLFNIYDDW LKSVSSYTCF SRLILILRAL HVNNDKAKML LRPDKSVVTE PHHIWPSLTD DQWMKVEVAL
1201: RDLILSDYAK KNNVSTSALT QSEMRDIILG ADITPPSQQR QQIAEIEKQA SQAIAVTTKT RNVHGDELIV STVTPYEQAA FSSKTDWRVR AISATNLYLR
1301: VNHIYVNSDN INESGYTYIM PKNLLKRFIC IADLRTQIAG YLYGISPPDN PRVKEIRCVV MVPQRGSSQA DAGGRSDPRG YVPTHYEKVQ MLLSDRFLGF
1401: YMVPENGSWN YNFMGTKHAV DMKYSVRLGY PKEYFDVEHR PTHFLEFSSM EDVEMAEGDR EDKFG
0001: MWNNNDGMPL APPGTGGSMM PPPPAAHPSY TALPPPSNPT PPVEPTPEEA EAKLEEKARK WMQLNSKRYG DKRKFGFVET QKEDMPPEHV RKIIRDHGDM
0101: SSKKFRHDKR VYLGALKFVP HAVFKLLENM PMPWEQVRDV KVLYHITGAI TFVNEIPWVV EPIYMAQWGT MWIMMRREKR DRRHFKRMRF PPFDDEEPPL
0201: DYADNLLDVD PLEPIQLELD EEEDSAVHTW FYDHKPLVKT KLINGPSYRR WNLSLPIMAT LHRLAGQLLS DLIDRNYFYL FDMPSFFTAK ALNMCIPGGP
0301: KFEPLYRDME KGDEDWNEFN DINKLIIRSP LRTEYRIAFP HLYNNRPRKV KLCVYHSPMI MYIKTEDPDL PAFYYDPLIH PISNTNKEKR ERKVYDDEDD
0401: FALPEGVEPL LRDTQLYTDT TAAGISLLFA PRPFNMRSGR TRRAEDIPLV SEWFKEHCPP AYPVKVRVSY QKLLKCYVLN ELHHRPPKAQ KKKHLFRSLA
0501: ATKFFQSTEL DWVEVGLQVC RQGYNMLNLL IHRKNLNYLH LDYNFNLKPV KTLTTKERKK SRFGNAFHLC REILRLTKLV VDANVQFRLG NVDAFQLADG
0601: LQYIFSHVGQ LTGMYRYKYR LMRQIRMCKD LKHLIYYRFN TGPVGKGPGC GFWAPMWRVW LFFLRGIVPL LERWLGNLLA RQFEGRHSKG VAKTVTKQRV
0701: ESHFDLELRA AVMHDVLDAM PEGIKQNKAR TILQHLSEAW RCWKANIPWK VPGLPVPIEN MILRYVKSKA DWWTNVAHYN RERIRRGATV DKTVCRKNLG
0801: RLTRLWLKAE QERQHNYLKD GPYVTPEEAL AIYTTTVHWL ESRKFSPIPF PPLSYKHDTK LLILALERLK ESYSVAVRLN QQQREELGLI EQAYDNPHEA
0901: LSRIKRHLLT QRGFKEVGIE FMDLYSYLIP VYEIEPLEKI TDAYLDQYLW YEGDKRHLFP NWIKPADSEP PPLLVYKWCQ GINNLQGIWD TGDGQCVVML
1001: QTKFEKFFEK IDLTMLNRLL RLVLDHNIAD YVSAKNNVVL SYKDMSHTNS YGLIRGLQFA SFVVQFYGLL LDLLLLGLTR ASEIAGPPQM PNEFMTFWDT
1101: KVETRHPIRL YSRYIDKVHI MFKFTHEEAR DLIQRYLTEH PDPNNENMVG YNNKKCWPRD ARMRLMKHDV NLGRSVFWDM KNRLPRSITT LEWENGFVSV
1201: YSKDNPNLLF SMCGFEVRIL PKIRMTQEAF SNTKDGVWNL QNEQTKERTA VAFLRVDDEH MKVFENRVRQ ILMSSGSTTF TKIVNKWNTA LIGLMTYFRE
1301: ATVHTQELLD LLVKCENKIQ TRIKIGLNSK MPSRFPPVIF YTPKEIGGLG MLSMGHILIP QSDLRYSKQT DVGVTHFRSG MSHEEDQLIP NLYRYIQPWE
1401: SEFIDSQRVW AEYALKRQEA QAQNRRLTLE DLEDSWDRGI PRINTLFQKD RHTLAYDKGW RVRTDFKQYQ VLKQNPFWWT HQRHDGKLWN LNNYRTDVIQ
1501: ALGGVEGILE HTLFKGTYFP TWEGLFWEKA SGFEESMKYK KLTNAQRSGL NQIPNRRFTL WWSPTINRAN VYVGFQVQLD LTGIFMHGKI PTLKISLIQI
1601: FRAHLWQKIH ESVVMDLCQV LDQELDALEI ETVQKETIHP RKSYKMNSSC ADVLLFAAHK WPMSKPSLVA ESKDMFDQKA SNKYWIDVQL RWGDYDSHDI
1701: ERYTRAKFMD YTTDNMSIYP SPTGVMIGLD LAYNLHSAFG NWFPGSKPLL AQAMNKIMKS NPALYVLRER IRKGLQLYSS EPTEPYLSSQ NYGEIFSNQI
1801: IWFVDDTNVY RVTIHKTFEG NLTTKPINGA IFIFNPRTGQ LFLKVIHTSV WAGQKRLGQL AKWKTAEEVA ALVRSLPVEE QPKQIIVTRK GMLDPLEVHL
1901: LDFPNIVIKG SELQLPFQAC LKIEKFGDLI LKATEPQMVL FNIYDDWLKS ISSYTAFSRL ILILRALHVN NEKAKMLLKP DKSVVTEPHH IWPSLTDDQW
2001: MKVEVALRDL ILSDYAKKNN VNTSALTQSE IRDIILGAEI TPPSQQRQQI AEIEKQAKEA SQLTAVTTRT TNVHGDELIV TTTSPYEQSA FGSKTDWRVR
2101: AISATNLYLR VNHIYVNSDD IKETGYTYIM PKNILKKFIC VADLRTQIAG YLYGISPPDN PQVKEIRCVV MVPQWGNHQL VHLPSSLPEH DFLNDLEPLG
2201: WLHTQPNELP QLSPQDVTSH SRILENNKQW DGEKCIILTC SFTPGSCSLT SYKLTQTGYE WGRLNKDNGS NPHGYLPTHY EKVQMLLSDR FLGFYMVPES
2301: GPWNYSFTGV KHTLSMKYSV KLGSPKEFYH EEHRPTHFLE FSNMEEADIT EGDREDTFT
0101: SSKKFRHDKR VYLGALKFVP HAVFKLLENM PMPWEQVRDV KVLYHITGAI TFVNEIPWVV EPIYMAQWGT MWIMMRREKR DRRHFKRMRF PPFDDEEPPL
0201: DYADNLLDVD PLEPIQLELD EEEDSAVHTW FYDHKPLVKT KLINGPSYRR WNLSLPIMAT LHRLAGQLLS DLIDRNYFYL FDMPSFFTAK ALNMCIPGGP
0301: KFEPLYRDME KGDEDWNEFN DINKLIIRSP LRTEYRIAFP HLYNNRPRKV KLCVYHSPMI MYIKTEDPDL PAFYYDPLIH PISNTNKEKR ERKVYDDEDD
0401: FALPEGVEPL LRDTQLYTDT TAAGISLLFA PRPFNMRSGR TRRAEDIPLV SEWFKEHCPP AYPVKVRVSY QKLLKCYVLN ELHHRPPKAQ KKKHLFRSLA
0501: ATKFFQSTEL DWVEVGLQVC RQGYNMLNLL IHRKNLNYLH LDYNFNLKPV KTLTTKERKK SRFGNAFHLC REILRLTKLV VDANVQFRLG NVDAFQLADG
0601: LQYIFSHVGQ LTGMYRYKYR LMRQIRMCKD LKHLIYYRFN TGPVGKGPGC GFWAPMWRVW LFFLRGIVPL LERWLGNLLA RQFEGRHSKG VAKTVTKQRV
0701: ESHFDLELRA AVMHDVLDAM PEGIKQNKAR TILQHLSEAW RCWKANIPWK VPGLPVPIEN MILRYVKSKA DWWTNVAHYN RERIRRGATV DKTVCRKNLG
0801: RLTRLWLKAE QERQHNYLKD GPYVTPEEAL AIYTTTVHWL ESRKFSPIPF PPLSYKHDTK LLILALERLK ESYSVAVRLN QQQREELGLI EQAYDNPHEA
0901: LSRIKRHLLT QRGFKEVGIE FMDLYSYLIP VYEIEPLEKI TDAYLDQYLW YEGDKRHLFP NWIKPADSEP PPLLVYKWCQ GINNLQGIWD TGDGQCVVML
1001: QTKFEKFFEK IDLTMLNRLL RLVLDHNIAD YVSAKNNVVL SYKDMSHTNS YGLIRGLQFA SFVVQFYGLL LDLLLLGLTR ASEIAGPPQM PNEFMTFWDT
1101: KVETRHPIRL YSRYIDKVHI MFKFTHEEAR DLIQRYLTEH PDPNNENMVG YNNKKCWPRD ARMRLMKHDV NLGRSVFWDM KNRLPRSITT LEWENGFVSV
1201: YSKDNPNLLF SMCGFEVRIL PKIRMTQEAF SNTKDGVWNL QNEQTKERTA VAFLRVDDEH MKVFENRVRQ ILMSSGSTTF TKIVNKWNTA LIGLMTYFRE
1301: ATVHTQELLD LLVKCENKIQ TRIKIGLNSK MPSRFPPVIF YTPKEIGGLG MLSMGHILIP QSDLRYSKQT DVGVTHFRSG MSHEEDQLIP NLYRYIQPWE
1401: SEFIDSQRVW AEYALKRQEA QAQNRRLTLE DLEDSWDRGI PRINTLFQKD RHTLAYDKGW RVRTDFKQYQ VLKQNPFWWT HQRHDGKLWN LNNYRTDVIQ
1501: ALGGVEGILE HTLFKGTYFP TWEGLFWEKA SGFEESMKYK KLTNAQRSGL NQIPNRRFTL WWSPTINRAN VYVGFQVQLD LTGIFMHGKI PTLKISLIQI
1601: FRAHLWQKIH ESVVMDLCQV LDQELDALEI ETVQKETIHP RKSYKMNSSC ADVLLFAAHK WPMSKPSLVA ESKDMFDQKA SNKYWIDVQL RWGDYDSHDI
1701: ERYTRAKFMD YTTDNMSIYP SPTGVMIGLD LAYNLHSAFG NWFPGSKPLL AQAMNKIMKS NPALYVLRER IRKGLQLYSS EPTEPYLSSQ NYGEIFSNQI
1801: IWFVDDTNVY RVTIHKTFEG NLTTKPINGA IFIFNPRTGQ LFLKVIHTSV WAGQKRLGQL AKWKTAEEVA ALVRSLPVEE QPKQIIVTRK GMLDPLEVHL
1901: LDFPNIVIKG SELQLPFQAC LKIEKFGDLI LKATEPQMVL FNIYDDWLKS ISSYTAFSRL ILILRALHVN NEKAKMLLKP DKSVVTEPHH IWPSLTDDQW
2001: MKVEVALRDL ILSDYAKKNN VNTSALTQSE IRDIILGAEI TPPSQQRQQI AEIEKQAKEA SQLTAVTTRT TNVHGDELIV TTTSPYEQSA FGSKTDWRVR
2101: AISATNLYLR VNHIYVNSDD IKETGYTYIM PKNILKKFIC VADLRTQIAG YLYGISPPDN PQVKEIRCVV MVPQWGNHQL VHLPSSLPEH DFLNDLEPLG
2201: WLHTQPNELP QLSPQDVTSH SRILENNKQW DGEKCIILTC SFTPGSCSLT SYKLTQTGYE WGRLNKDNGS NPHGYLPTHY EKVQMLLSDR FLGFYMVPES
2301: GPWNYSFTGV KHTLSMKYSV KLGSPKEFYH EEHRPTHFLE FSNMEEADIT EGDREDTFT
Arabidopsis Description
PRP8ASUS2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7J7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.