CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030679.1-P	Field mustard	nucleus	99.79	99.58
CDX86491	Canola	nucleus	86.22	93.44
AT1G07360.1	Thale cress	nucleus	90.81	90.44
CDY51359	Canola	nucleus	75.78	79.26
CDX97876	Canola	nucleus	75.37	78.31
GSMUA_Achr11P...	Banana	cytosol	64.93	66.03
GSMUA_Achr8P23920_001	Banana	cytosol, nucleus, plastid	63.88	64.42
Os06t0170500-01	Rice	nucleus	64.72	64.32
CDX70201	Canola	nucleus	38.0	64.31
TraesCS7B01G032400.1	Wheat	nucleus	65.76	63.38
EER89290	Sorghum	cytosol, nucleus, plastid	64.93	63.34
EES07378	Sorghum	cytosol, nucleus, plastid	64.93	63.34
TraesCS7D01G131000.1	Wheat	cytosol	65.55	63.18
TraesCS7A01G131700.1	Wheat	nucleus	65.55	63.18
Os07t0281000-01	Rice	cytosol, nucleus, plastid	64.09	63.17
Zm00001d045183_P001	Maize	extracellular, plasma membrane	64.51	62.68
CDY70348	Canola	nucleus	39.25	62.05
CDY44880	Canola	nucleus	39.25	62.05
PGSC0003DMT400075131	Potato	cytosol	12.53	61.86
HORVU7Hr1G027490.1	Barley	cytosol, mitochondrion, nucleus	65.34	58.61
CDY53361	Canola	nucleus	32.78	51.31
CDY51311	Canola	nucleus	6.47	41.33
CDX70237	Canola	extracellular	15.03	37.31
CDX72949	Canola	nucleus	6.26	23.08
CDX70241	Canola	cytosol	18.79	22.67
CDX70240	Canola	cytosol	6.68	15.69

Protein Annotations

MapMan:15.5.16	MapMan:16.4.5.2.1	Gene3D:3.30.70.330	Gene3D:4.10.1000.10	GO:A0A078FRV1	UniProt:A0A078FRV1
EnsemblPlants:CDY15609	ProteinID:CDY15609	ProteinID:CDY15609.1	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00089795001	InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF16131	PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR14089	PANTHER:PTHR14089:SF6
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00356	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF90229
InterPro:Torus	UniParc:UPI0004EEB0A9	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:

Description

BnaA08g28930DBnaA08g28930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FRV1]

Coordinates

chrLK032055:-:706151..708616

Molecular Weight (calculated)

53439.6 Da

IEP (calculated)

7.288

GRAVY (calculated)

-0.853

Length

479 amino acids

Sequence
(BLAST)

001: MAHRILRDHD ADGWERSDFP IVCESCLGDN PYVRMTKAEY DKECKICTRP FTVFRWRPGR DARYKKTEIC QTCCKLKNVC QVCLLDLEYG LPVQARDTAL
101: NISTHDSIPK SDVNREYFAE EHDRKTRAGL DYESSFGKMR PNDTILKLQR TTPYYKRNRA HVCSFFIRGE CTRGEECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVAMKLL GKAGEMGTLE SPDDQSIKTL YVGGLNSRIL EQDLRDQFYA YGEIESIRIL ADKACAFVTY TAREGAEKAA QELSNRLVVN GQRLKLMWGR
301: PQAPRPDQDG SNQQGGVAHS GLLPRAVISQ QHNQPPPMQQ YYMHPPPPNQ DKPYYPSMDP QRMGAVISTQ EAGGSSTENN GGSSSSYMMP PHQPYPPAPY
401: GYMPSPYQQQ YPGPMHHHYA PPPAAYQSYP QQPGPGSKPA PSPSAVSAPP PDSAPAGSSA PSGSSQQPPT ASTTTDSSQ

Best Arabidopsis Sequence Match ( AT1G07360.1 )
(BLAST)

001: MAHRILRDHE ADGWERSDFP IICESCLGDN PYVRMTKANY DKECKICTRP FTVFRWRPGR DARYKKTEIC QTCCKLKNVC QVCLLDLEYG LPVQVRDTAL
101: NISTHDSIPK SDVNREYFAE EHDRKARAGL DYESSFGKMR PNDTILKLQR TTPYYKRNRA HVCSFFIRGE CTRGAECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVAMKLL GKAGEMGTLE SPDDESIKTL YVGGLNSRIL EQDIRDQFYA HGEIESIRIL ADKACAFVTY TSREGAEKAA QELSNRLVIN GQRLKLTWGR
301: PKPDQDGANQ QGGVAHSGLL PRAVISQQHN QPPPMQQYYM HPPPANQDKP YYPSMDPQRM GAVISTQEAG GSSTENNGAS SSSYMMPPHQ SYPPPPYGYM
401: PSPYQQQYPP NHHHQPSPMQ HYAPPPAAYP YPQQPGPGSR PAPSPTAVSA ISPDSAPAGS GAPSGSSQQA PDVSTATGSS Q

Arabidopsis Description

Zinc finger CCCH domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.