Factsheet for TraesCS7A01G131700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G131000.1	Wheat	cytosol	98.79	98.79
TraesCS7B01G032400.1	Wheat	nucleus	97.99	97.99
HORVU7Hr1G027490.1	Barley	cytosol, mitochondrion, nucleus	97.99	91.2
Os06t0170500-01	Rice	nucleus	84.91	87.55
Os07t0281000-01	Rice	cytosol, nucleus, plastid	84.91	86.83
EES07378	Sorghum	cytosol, nucleus, plastid	84.71	85.74
EER89290	Sorghum	cytosol, nucleus, plastid	84.1	85.13
VIT_06s0004g05990.t01	Wine grape	cytosol	37.42	84.93
Zm00001d045183_P001	Maize	extracellular, plasma membrane	83.7	84.38
GSMUA_Achr11P...	Banana	cytosol	73.24	77.28
GSMUA_Achr8P23920_001	Banana	cytosol, nucleus, plastid	72.03	75.37
Solyc04g017710.2.1	Tomato	nucleus	70.02	72.65
KRH18690	Soybean	nucleus	68.01	72.38
PGSC0003DMT400021046	Potato	cytosol	68.81	71.4
Solyc10g079190.1.1	Tomato	nucleus	68.61	71.19
KRG89828	Soybean	nucleus	68.61	70.89
KRH14167	Soybean	nucleus	68.41	70.54
KRH73960	Soybean	nucleus	67.81	69.63
CDY15609	Canola	nucleus	63.18	65.55
Bra030679.1-P	Field mustard	nucleus	62.98	65.21
AT1G07360.1	Thale cress	nucleus	62.98	65.07
CDY51359	Canola	nucleus	59.36	64.41
Bra009429.1-P	Field mustard	nucleus	41.05	64.35
CDX86491	Canola	nucleus	57.14	64.25
AT2G29580.1	Thale cress	nucleus	61.97	63.77
Bra039988.1-P	Field mustard	nucleus	57.95	63.58
CDX97876	Canola	nucleus	58.95	63.56
AT5G07060.1	Thale cress	nucleus	45.07	61.71
CDX70201	Canola	nucleus	35.01	61.48
VIT_06s0004g06000.t01	Wine grape	nucleus	32.8	58.84
PGSC0003DMT400075131	Potato	cytosol	11.27	57.73
CDY44880	Canola	nucleus	35.01	57.43
CDY70348	Canola	nucleus	35.01	57.43
CDY53361	Canola	nucleus	29.18	47.39
CDY51311	Canola	nucleus	5.84	38.67
CDX70237	Canola	extracellular	13.08	33.68
AT5G04210.1	Thale cress	cytosol	12.88	33.16
Bra009465.1-P	Field mustard	cytosol	17.71	24.44
CDX70241	Canola	cytosol	17.71	22.17
Bra009466.1-P	Field mustard	cytosol	18.31	21.62
CDX72949	Canola	nucleus	5.63	21.54
CDX70240	Canola	cytosol	6.84	16.67

Protein Annotations

MapMan:15.5.16	MapMan:16.4.5.2.1	Gene3D:3.30.70.330	Gene3D:4.10.1000.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0046872	InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF16131	PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR14089	PANTHER:PTHR14089:SF6
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00356	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF90229
InterPro:Torus	EnsemblPlantsGene:TraesCS7A01G131700	EnsemblPlants:TraesCS7A01G131700.1	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	TIGR:cd12224
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7A:-:85074056..85077614

Molecular Weight (calculated)

55397.4 Da

IEP (calculated)

8.095

GRAVY (calculated)

-0.805

Length

497 amino acids

Sequence
(BLAST)

001: MAHRLLRDAQ ADGWERSDFP IICESCLGDN PYVRMLRAEY DKECKICARP FTVFRWRPGR DARYKKTEIC QTCCKLKNVC QVCLLDLEYG LPVQVRDTAL
101: AINSNDAIPR SDVNREYFAE EHDRKAAAGI DYDSSYGKAR PNDTILKLQR TSPYYKRNRA HVCSFYVRGE CTRGAECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVALKLL GKAGEMPSLQ PPDDETIRTL YIGGLDNRVS EQDLRDQFYA HGEIESIRMV IQRACAFVTY TTREGAERAA EELANKLVIK GVRLKLMWGK
301: PQAPRQDDDE AGRQGHVSHG GLLPRAVISQ QHSSDQPQPP GMEGQQQVAP QGSGYFNIPP PPAVDQRMYP SMDPQRMGAV VRSQEGDGSK AGPQHAGQAQ
401: ASSSSGQGYP MRPPLPPYYQ GAQYPPYYPP PPYGGGYMAP PRMPYPPQYP PYRPMLAPPA QQPQGSSSQQ PVPAPAGQQQ AQAPRAQQQP PAAAAQN

Best Arabidopsis Sequence Match ( AT1G07360.1 )
(BLAST)

001: MAHRILRDHE ADGWERSDFP IICESCLGDN PYVRMTKANY DKECKICTRP FTVFRWRPGR DARYKKTEIC QTCCKLKNVC QVCLLDLEYG LPVQVRDTAL
101: NISTHDSIPK SDVNREYFAE EHDRKARAGL DYESSFGKMR PNDTILKLQR TTPYYKRNRA HVCSFFIRGE CTRGAECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVAMKLL GKAGEMGTLE SPDDESIKTL YVGGLNSRIL EQDIRDQFYA HGEIESIRIL ADKACAFVTY TSREGAEKAA QELSNRLVIN GQRLKLTWGR
301: PKPDQDGANQ QGGVAHSGLL PRAVISQQHN QPPPMQQYYM HPPPANQDKP YYPSMDPQRM GAVISTQEAG GSSTENNGAS SSSYMMPPHQ SYPPPPYGYM
401: PSPYQQQYPP NHHHQPSPMQ HYAPPPAAYP YPQQPGPGSR PAPSPTAVSA ISPDSAPAGS GAPSGSSQQA PDVSTATGSS Q

Arabidopsis Description

Zinc finger CCCH domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.