Factsheet for AT2G29580.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039988.1-P	Field mustard	nucleus	78.67	83.89
CDY51359	Canola	nucleus	79.3	83.62
CDX97876	Canola	nucleus	79.71	83.51
AT1G07360.1	Thale cress	nucleus	78.88	79.21
AT5G07060.1	Thale cress	nucleus	49.9	66.39
GSMUA_Achr11P...	Banana	cytosol	63.98	65.61
Os06t0170500-01	Rice	nucleus	63.98	64.11
GSMUA_Achr8P23920_001	Banana	cytosol, nucleus, plastid	62.94	64.0
Os07t0281000-01	Rice	cytosol, nucleus, plastid	63.56	63.17
EER89290	Sorghum	cytosol, nucleus, plastid	63.35	62.32
TraesCS7D01G131000.1	Wheat	cytosol	63.98	62.17
TraesCS7B01G032400.1	Wheat	nucleus	63.98	62.17
EES07378	Sorghum	cytosol, nucleus, plastid	63.15	62.12
Zm00001d045183_P001	Maize	extracellular, plasma membrane	63.35	62.07
TraesCS7A01G131700.1	Wheat	nucleus	63.77	61.97
PGSC0003DMT400075131	Potato	cytosol	11.8	58.76
HORVU7Hr1G027490.1	Barley	cytosol, mitochondrion, nucleus	63.77	57.68
CDY53361	Canola	nucleus	33.95	53.59
AT5G04210.1	Thale cress	cytosol	15.32	38.34

Protein Annotations

MapMan:15.5.16	MapMan:16.4.5.2.1	Gene3D:3.30.70.330	Gene3D:4.10.1000.10	EntrezGene:817507	ProteinID:AAC95181.1
ProteinID:AEC08275.1	EMBL:AF428354	ArrayExpress:AT2G29580	EnsemblPlantsGene:AT2G29580	RefSeq:AT2G29580	TAIR:AT2G29580
RefSeq:AT2G29580-TAIR-G	EnsemblPlants:AT2G29580.1	TAIR:AT2G29580.1	Unigene:At.12692	EMBL:BT002621	GO:GO:0000387
GO:GO:0000398	GO:GO:0000974	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003723
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0017070
GO:GO:0036002	GO:GO:0046872	GO:GO:0071006	GO:GO:0071007	InterPro:IPR000504	InterPro:IPR000571
InterPro:IPR012677	RefSeq:NP_180518.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF16131	PO:PO:0000037
PO:PO:0000293	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007611
PO:PO:0008019	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009031	PO:PO:0009046
PO:PO:0009047	PO:PO:0025022	PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR14089	PANTHER:PTHR14089:SF6
UniProt:Q9ZW36	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00356	SMART:SM00360	SUPFAM:SSF54928
SUPFAM:SSF90229	InterPro:Torus	UniParc:UPI00000ABF8E	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg

Description

Zinc finger CCCH domain-containing protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW36]

Coordinates

chr2:+:12651826..12654336

Molecular Weight (calculated)

54255.3 Da

IEP (calculated)

7.394

GRAVY (calculated)

-0.899

Length

483 amino acids

Sequence
(BLAST)

001: MAHRILRDHE ADGWERSDFP IICESCLGDN PYVRMTKANY DKECKICTRP FTVFRWRPGR DARYKKTEVC QTCCKLKNVC QVCLLDLEYG LPVQVRDTAL
101: NISTHDSIPK SDVNREFFAE EHDRKTRAGL DYESSFGKIR PNDTIRMLQR TTPYYKRNRA HICSFFIRGE CTRGDECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVALKLL GKAGEMGTLE SPEDQSIRTL YVGGLNSRVL EQDIRDQFYA HGEIESIRIL AEKACAFVTY TTREGAEKAA EELSNRLVVN GQRLKLTWGR
301: PQVPKPDQDG SNQQGSVAHS GLLPRAVISQ QQNQPPPMLQ YYMHPPPPQP PHQDRPFYPS MDPQRMGAVS SSKESGSSTS DNRGASSSSY TMPPHGHYPQ
401: HQPYPPPSYG GYMQPPYQQY PPYHHGHSQQ ADHDYPQQPG PGSRPNPPHP SSVSAPPPDS VSAAPSGSSQ QSADAAVTTG SSQ

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.