Factsheet for GSMUA_Achr11P20770_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g05990.t01	Wine grape	cytosol	40.55	87.21
GSMUA_Achr8P23920_001	Banana	cytosol, nucleus, plastid	87.26	86.53
Os06t0170500-01	Rice	nucleus	79.19	77.39
Os07t0281000-01	Rice	cytosol, nucleus, plastid	78.56	76.13
EES07378	Sorghum	cytosol, nucleus, plastid	78.56	75.36
EER89290	Sorghum	cytosol, nucleus, plastid	77.92	74.75
KRH18690	Soybean	nucleus	73.25	73.88
Zm00001d045183_P001	Maize	extracellular, plasma membrane	77.28	73.83
TraesCS7D01G131000.1	Wheat	cytosol	77.49	73.44
TraesCS7B01G032400.1	Wheat	nucleus	77.49	73.44
TraesCS7A01G131700.1	Wheat	nucleus	77.28	73.24
Solyc04g017710.2.1	Tomato	nucleus	74.1	72.86
PGSC0003DMT400021046	Potato	cytosol	74.1	72.86
Solyc10g079190.1.1	Tomato	nucleus	74.1	72.86
KRG89828	Soybean	nucleus	73.67	72.14
KRH14167	Soybean	nucleus	72.82	71.16
KRH73960	Soybean	nucleus	72.61	70.66
HORVU7Hr1G027490.1	Barley	cytosol, mitochondrion, nucleus	77.71	68.54
AT1G07360.1	Thale cress	nucleus	66.67	65.28
Bra009429.1-P	Field mustard	nucleus	43.74	64.98
CDY15609	Canola	nucleus	66.03	64.93
Bra039988.1-P	Field mustard	nucleus	62.42	64.9
Bra030679.1-P	Field mustard	nucleus	66.03	64.79
CDX97876	Canola	nucleus	62.84	64.21
CDY51359	Canola	nucleus	62.42	64.19
AT2G29580.1	Thale cress	nucleus	65.61	63.98
CDX86491	Canola	nucleus	59.87	63.8
VIT_06s0004g06000.t01	Wine grape	nucleus	36.94	62.82
AT5G07060.1	Thale cress	nucleus	48.41	62.81
CDX70201	Canola	nucleus	37.58	62.54
PGSC0003DMT400075131	Potato	cytosol	12.1	58.76
CDY70348	Canola	nucleus	37.37	58.09
CDY44880	Canola	nucleus	37.37	58.09
CDY53361	Canola	nucleus	31.42	48.37
CDY51311	Canola	nucleus	6.16	38.67
AT5G04210.1	Thale cress	cytosol	14.23	34.72
CDX70237	Canola	extracellular	13.8	33.68
Bra009465.1-P	Field mustard	cytosol	18.9	24.72
CDX70241	Canola	cytosol	18.26	21.66
Bra009466.1-P	Field mustard	cytosol	18.68	20.9
CDX72949	Canola	nucleus	5.52	20.0
CDX70240	Canola	cytosol	6.79	15.69

Protein Annotations

MapMan:15.5.16	MapMan:16.4.5.2.1	Gene3D:3.30.70.330	Gene3D:4.10.1000.10	GO:GO:0000398	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr11G20770_001	EnsemblPlants:GSMUA_Achr11P20770_001	EnsemblPlants:GSMUA_Achr11T20770_001	InterPro:IPR000504
InterPro:IPR000571	InterPro:IPR012677	UniProt:M0RU07	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF16131
PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR14089	PANTHER:PTHR14089:SF6	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00356	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF90229	InterPro:Torus	UniParc:UPI000295AA22
InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:	:	:

Description

Zinc finger CCCH domain-containing protein 40 [Source:GMGC_GENE;Acc:GSMUA_Achr11G20770_001]

Coordinates

chr11:+:21640745..21645526

Molecular Weight (calculated)

53257.1 Da

IEP (calculated)

7.634

GRAVY (calculated)

-0.833

Length

471 amino acids

Sequence
(BLAST)

001: MAHRLLRDAQ ADGWERSDFP IICESCLGDN PYIRMTKADY DKECKICKRP FTVFRWRPGR DARYKKTEIC QTCCKLKNVC QVCILDLEYG LPVQVRDTAL
101: AINSNDAIPK SDVNREYFAE EHDRKARAGI DYESSYGKVH PNDTILKLQR TTPYYKRNRA HVCSFYMRGE CTRGAECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVALKLL SKAGEMPSLE PPEDESIKTL YVGGLDARVS EQDLRDNFYA HGEIESIRMV LQRACAFVTY TTREAAEKAA EELANKLVIK GLRLKLMWGR
301: PQAPKPEGET QDDDAARQGL VAHGGMLPRA VISQQQSNQQ PLPPGTETHQ QQQPNYFNIP APPQAARTFY PSMDPQRMGA VIQSQGGSDD KTGSEKQQGQ
401: QAPNVQGHAY PMVPPHLQGQ YPHYYPPYGY MAPPPPPYQQ QYPPYQSMMS RPPPPAPPAM QQYPQGPPGP S

Best Arabidopsis Sequence Match ( AT1G07360.1 )
(BLAST)

001: MAHRILRDHE ADGWERSDFP IICESCLGDN PYVRMTKANY DKECKICTRP FTVFRWRPGR DARYKKTEIC QTCCKLKNVC QVCLLDLEYG LPVQVRDTAL
101: NISTHDSIPK SDVNREYFAE EHDRKARAGL DYESSFGKMR PNDTILKLQR TTPYYKRNRA HVCSFFIRGE CTRGAECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVAMKLL GKAGEMGTLE SPDDESIKTL YVGGLNSRIL EQDIRDQFYA HGEIESIRIL ADKACAFVTY TSREGAEKAA QELSNRLVIN GQRLKLTWGR
301: PKPDQDGANQ QGGVAHSGLL PRAVISQQHN QPPPMQQYYM HPPPANQDKP YYPSMDPQRM GAVISTQEAG GSSTENNGAS SSSYMMPPHQ SYPPPPYGYM
401: PSPYQQQYPP NHHHQPSPMQ HYAPPPAAYP YPQQPGPGSR PAPSPTAVSA ISPDSAPAGS GAPSGSSQQA PDVSTATGSS Q

Arabidopsis Description

Zinc finger CCCH domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.