Factsheet for Solyc10g079190.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021046	Potato	cytosol	98.33	98.33
Solyc04g017710.2.1	Tomato	nucleus	85.8	85.8
KRH18690	Soybean	nucleus	75.99	77.94
KRG89828	Soybean	nucleus	77.87	77.55
KRH14167	Soybean	nucleus	75.78	75.31
KRH73960	Soybean	nucleus	75.57	74.79
GSMUA_Achr11P...	Banana	cytosol	72.86	74.1
GSMUA_Achr8P23920_001	Banana	cytosol, nucleus, plastid	72.86	73.47
Os07t0281000-01	Rice	cytosol, nucleus, plastid	72.86	71.81
Os06t0170500-01	Rice	nucleus	71.82	71.37
EER89290	Sorghum	cytosol, nucleus, plastid	72.03	70.26
EES07378	Sorghum	cytosol, nucleus, plastid	72.03	70.26
VIT_06s0004g06000.t01	Wine grape	nucleus	40.29	69.68
Zm00001d045183_P001	Maize	extracellular, plasma membrane	71.4	69.37
TraesCS7B01G032400.1	Wheat	nucleus	71.4	68.81
TraesCS7A01G131700.1	Wheat	nucleus	71.19	68.61
TraesCS7D01G131000.1	Wheat	cytosol	71.19	68.61
HORVU7Hr1G027490.1	Barley	cytosol, mitochondrion, nucleus	70.98	63.67
CDX70237	Canola	extracellular	13.78	34.2
AT5G04210.1	Thale cress	cytosol	13.57	33.68
CDY51311	Canola	nucleus	5.22	33.33
Bra009465.1-P	Field mustard	cytosol	18.79	25.0
CDX72949	Canola	nucleus	5.85	21.54
CDX70241	Canola	cytosol	16.49	19.9
Bra009466.1-P	Field mustard	cytosol	17.33	19.71
CDX70240	Canola	cytosol	7.1	16.67

Protein Annotations

MapMan:15.5.16	MapMan:16.4.5.2.1	Gene3D:3.30.70.330	Gene3D:4.10.1000.10	ProteinID:ABO36623.1	UniProt:B1N661
GO:GO:0000387	GO:GO:0000398	GO:GO:0000974	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0017070	GO:GO:0036002
GO:GO:0046872	GO:GO:0071006	GO:GO:0071007	InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF16131	PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR14089
PANTHER:PTHR14089:SF6	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00356	SMART:SM00360	SUPFAM:SSF54928
SUPFAM:SSF90229	EnsemblPlantsGene:Solyc10g079190.1	EnsemblPlants:Solyc10g079190.1.1	InterPro:Torus	UniParc:UPI000171BD95	InterPro:Znf_CCCH
InterPro:Znf_CCCH_sf	SEG:seg	:	:	:	:

Description

Putative RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:B1N661]

Coordinates

chr10:-:60781473..60785498

Molecular Weight (calculated)

53832.5 Da

IEP (calculated)

7.855

GRAVY (calculated)

-0.781

Length

479 amino acids

Sequence
(BLAST)

001: MAHRLLRDAE ADGWERSDFP IICESCLGDS PYVRMTKADY DKECKICTRP FTVFRWRPGR DARYKKSEIC QTCSKLKNVC QVCLLDLEYG LPVQVRDTAL
101: SINSNDAIPK SDVNREYFAE EHDRRARAGI DYESSYGKVR ANDTIMKLQR TTPYYKRNRA HVCSFYIRGQ CTRGLECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVALKLL NKAGEMPSLE PPDDESIRTL YVGGVDARIT EQDLRDHFYA HGEIESIKMV VQRGCAFVTY TTREGAVKAA EELANKLVIK GLRLKLLWGR
301: PQVPKPESEV SDEARQQAAL THSGLLPRAV VSQQQNQPLQ PPGTQDQPPS MPYFNIPPMP QQDRPYYPSM DPQRMGAVIA SQEGASSSTA GSGPGENKIG
401: SDHQQGHHYA YPPGGPPPPG QFYPPYYRPA YGYMPPPPPP YHQYPPPPYQ ATAHPPPSVQ LAAHQQNPRP AAAATTQQP

Best Arabidopsis Sequence Match ( AT1G07360.1 )
(BLAST)

001: MAHRILRDHE ADGWERSDFP IICESCLGDN PYVRMTKANY DKECKICTRP FTVFRWRPGR DARYKKTEIC QTCCKLKNVC QVCLLDLEYG LPVQVRDTAL
101: NISTHDSIPK SDVNREYFAE EHDRKARAGL DYESSFGKMR PNDTILKLQR TTPYYKRNRA HVCSFFIRGE CTRGAECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVAMKLL GKAGEMGTLE SPDDESIKTL YVGGLNSRIL EQDIRDQFYA HGEIESIRIL ADKACAFVTY TSREGAEKAA QELSNRLVIN GQRLKLTWGR
301: PKPDQDGANQ QGGVAHSGLL PRAVISQQHN QPPPMQQYYM HPPPANQDKP YYPSMDPQRM GAVISTQEAG GSSTENNGAS SSSYMMPPHQ SYPPPPYGYM
401: PSPYQQQYPP NHHHQPSPMQ HYAPPPAAYP YPQQPGPGSR PAPSPTAVSA ISPDSAPAGS GAPSGSSQQA PDVSTATGSS Q

Arabidopsis Description

Zinc finger CCCH domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.