Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009465.1-P | Field mustard | cytosol | 70.1 | 39.72 |
| CDY70348 | Canola | nucleus | 15.69 | 10.56 |
| CDY44880 | Canola | nucleus | 15.69 | 10.56 |
| VIT_06s0004g05990.t01 | Wine grape | cytosol | 11.27 | 10.5 |
| CDX70201 | Canola | nucleus | 12.75 | 9.19 |
| GSMUA_Achr8P23920_001 | Banana | cytosol, nucleus, plastid | 17.16 | 7.37 |
| CDY51359 | Canola | nucleus | 16.18 | 7.21 |
| Solyc10g079190.1.1 | Tomato | nucleus | 16.67 | 7.1 |
| Solyc04g017710.2.1 | Tomato | nucleus | 16.67 | 7.1 |
| PGSC0003DMT400021046 | Potato | cytosol | 16.67 | 7.1 |
| KRH18690 | Soybean | nucleus | 16.18 | 7.07 |
| Os07t0281000-01 | Rice | cytosol, nucleus, plastid | 16.67 | 7.0 |
| CDX97876 | Canola | nucleus | 15.69 | 6.94 |
| KRG89828 | Soybean | nucleus | 16.18 | 6.86 |
| KRH14167 | Soybean | nucleus | 16.18 | 6.85 |
| Os06t0170500-01 | Rice | nucleus | 16.18 | 6.85 |
| TraesCS7D01G131000.1 | Wheat | cytosol | 16.67 | 6.84 |
| TraesCS7A01G131700.1 | Wheat | nucleus | 16.67 | 6.84 |
| TraesCS7B01G032400.1 | Wheat | nucleus | 16.67 | 6.84 |
| KRH73960 | Soybean | nucleus | 16.18 | 6.82 |
| GSMUA_Achr11P... | Banana | cytosol | 15.69 | 6.79 |
| CDX86491 | Canola | nucleus | 14.71 | 6.79 |
| EES07378 | Sorghum | cytosol, nucleus, plastid | 16.18 | 6.72 |
| EER89290 | Sorghum | cytosol, nucleus, plastid | 16.18 | 6.72 |
| Zm00001d045183_P001 | Maize | extracellular, plasma membrane | 16.18 | 6.69 |
| CDY15609 | Canola | nucleus | 15.69 | 6.68 |
| CDY53361 | Canola | nucleus | 9.8 | 6.54 |
| HORVU7Hr1G027490.1 | Barley | cytosol, mitochondrion, nucleus | 16.67 | 6.37 |
| AT5G04210.1 | Thale cress | cytosol | 5.39 | 5.7 |
| CDX70237 | Canola | extracellular | 5.39 | 5.7 |
| VIT_06s0004g06000.t01 | Wine grape | nucleus | 5.88 | 4.33 |
| CDX70241 | Canola | cytosol | 4.9 | 2.52 |
| CDX72949 | Canola | nucleus | 0.98 | 1.54 |
| CDY51311 | Canola | nucleus | 0.49 | 1.33 |
Protein Annotations
| EnsemblPlants:CDX70240 | EnsemblPlantsGene:GSBRNA2T00136371001 | ProteinID:CDX70240 | ProteinID:CDX70240.1 | UniParc:UPI0004EEAA88 | MapMan:35.2 |
Description
BnaA10g25890D
Coordinates
chrLK031790:-:3710287..3711622
Molecular Weight (calculated)
23844.5 Da
IEP (calculated)
4.595
GRAVY (calculated)
-0.206
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGREMFPVV ECYGTEVLTS ENSETEISVP FYRVRGRSFT RTIFRPTVGF DLLLGQVRDE APMYEFSPYL PLDALENREK LHQCILEYPP PENIRVIPDH
101: FNDLGWNWYH TATVLSNYVH DVVFNNITPF AVEGDEAFGT VILMRQDNRW HRESWRLNAP EPMLSRECTI CGDPLTYTPI DYLLGLQKII SYPIDFPFWL
201: KLVM
101: FNDLGWNWYH TATVLSNYVH DVVFNNITPF AVEGDEAFGT VILMRQDNRW HRESWRLNAP EPMLSRECTI CGDPLTYTPI DYLLGLQKII SYPIDFPFWL
201: KLVM
001: MDVYEATRIV LSRIQNLDPA NASKIIGLLL LQDHGEKEMI RLAFGPQNLL HSVIAKAKKD LEERLSFLTP RTAEDFESDL GFGWGHRKEV LRSNSVPPRL
101: ANQFTGYPFS PKGVNLQQSE AQRAAALMMG DDLHKLGIWR PERIDLSATA CPASRQIYLT FPADSIFREE DVSDYFSTFG PVQDVRIPYQ QKRMFGFVTF
201: MYPETVKSIL AKGNPHFVCH SRVLVKPYKE KGKVPDKTKP SRDIMDFQLG GRAFHEDLLW KRRFEERALE LQSTRLMNLQ LLDVEKQFQL NFDQTLLVSP
301: RLVSNNQRVC TKENDEDTIK LPESLEDDRL VDSPIVSPKH HFLECGVAAE TKGSGLSSPS FDQDESSTGT LKEPLKSLKC QMPRLSMMGI TQGSSGPTTC
401: RVGI
101: ANQFTGYPFS PKGVNLQQSE AQRAAALMMG DDLHKLGIWR PERIDLSATA CPASRQIYLT FPADSIFREE DVSDYFSTFG PVQDVRIPYQ QKRMFGFVTF
201: MYPETVKSIL AKGNPHFVCH SRVLVKPYKE KGKVPDKTKP SRDIMDFQLG GRAFHEDLLW KRRFEERALE LQSTRLMNLQ LLDVEKQFQL NFDQTLLVSP
301: RLVSNNQRVC TKENDEDTIK LPESLEDDRL VDSPIVSPKH HFLECGVAAE TKGSGLSSPS FDQDESSTGT LKEPLKSLKC QMPRLSMMGI TQGSSGPTTC
401: RVGI
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4J108]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.