Skip to main content
crop-pal logo
Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • mitochondrion 1
  • plastid 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER89290 Sorghum cytosol, nucleus, plastid 97.35 97.35
Zm00001d045183_P001 Maize extracellular, plasma membrane 96.33 95.94
Os06t0170500-01 Rice nucleus 89.0 90.66
Os07t0281000-01 Rice cytosol, nucleus, plastid 89.41 90.33
TraesCS7B01G032400.1 Wheat nucleus 86.35 85.31
TraesCS7D01G131000.1 Wheat cytosol 86.15 85.11
VIT_06s0004g05990.t01 Wine grape cytosol 37.88 84.93
TraesCS7A01G131700.1 Wheat nucleus 85.74 84.71
HORVU7Hr1G027490.1 Barley cytosol, mitochondrion, nucleus 86.76 79.78
GSMUA_Achr11P... Banana cytosol 75.36 78.56
GSMUA_Achr8P23920_001 Banana cytosol, nucleus, plastid 73.93 76.42
KRH18690 Soybean nucleus 69.86 73.45
Solyc04g017710.2.1 Tomato nucleus 71.49 73.28
PGSC0003DMT400021046 Potato cytosol 70.88 72.65
Solyc10g079190.1.1 Tomato nucleus 70.26 72.03
KRH14167 Soybean nucleus 70.67 71.99
KRG89828 Soybean nucleus 70.47 71.93
KRH73960 Soybean nucleus 69.86 70.87
CDY15609 Canola nucleus 63.34 64.93
Bra030679.1-P Field mustard nucleus 63.34 64.79
AT1G07360.1 Thale cress nucleus 63.14 64.45
Bra009429.1-P Field mustard nucleus 41.55 64.35
Bra039988.1-P Field mustard nucleus 58.86 63.8
CDY51359 Canola nucleus 59.47 63.76
CDX86491 Canola nucleus 57.23 63.57
AT2G29580.1 Thale cress nucleus 62.12 63.15
CDX97876 Canola nucleus 59.27 63.12
AT5G07060.1 Thale cress nucleus 45.21 61.16
CDX70201 Canola nucleus 35.23 61.13
VIT_06s0004g06000.t01 Wine grape nucleus 34.01 60.29
PGSC0003DMT400075131 Potato cytosol 11.61 58.76
CDY70348 Canola nucleus 36.05 58.42
CDY44880 Canola nucleus 36.05 58.42
CDY53361 Canola nucleus 29.94 48.04
CDY51311 Canola nucleus 5.7 37.33
CDX70237 Canola extracellular 13.44 34.2
AT5G04210.1 Thale cress cytosol 13.44 34.2
Bra009465.1-P Field mustard cytosol 18.13 24.72
CDX72949 Canola nucleus 6.11 23.08
CDX70241 Canola cytosol 17.92 22.17
Bra009466.1-P Field mustard cytosol 18.53 21.62
CDX70240 Canola cytosol 6.72 16.18
Protein Annotations
MapMan:15.5.16MapMan:16.4.5.2.1Gene3D:3.30.70.330Gene3D:4.10.1000.10EntrezGene:8073843UniProt:C5Y082
ncoils:CoilEnsemblPlants:EES07378ProteinID:EES07378ProteinID:EES07378.1GO:GO:0000387GO:GO:0000398
GO:GO:0000974GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0016043GO:GO:0017070GO:GO:0036002GO:GO:0046872GO:GO:0071006
GO:GO:0071007InterPro:IPR000504InterPro:IPR000571InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sfPFAM:PF00076
PFAM:PF16131PFscan:PS50102PFscan:PS50103PANTHER:PTHR14089PANTHER:PTHR14089:SF6InterPro:RBD_domain_sf
InterPro:RRM_domSMART:SM00356SMART:SM00360EnsemblPlantsGene:SORBI_3004G263900SUPFAM:SSF54928SUPFAM:SSF90229
unigene:Sbi.20703InterPro:TorusUniParc:UPI0001A85BD9RefSeq:XP_002454402.1InterPro:Znf_CCCHInterPro:Znf_CCCH_sf
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr4:-:60876475..60880311
Molecular Weight (calculated)
54951.8 Da
IEP (calculated)
7.615
GRAVY (calculated)
-0.840
Length
491 amino acids
Sequence
(BLAST)
001: MAHRLLRDAQ ADGWERSDFP IICESCLGDN PYVRMLRAEY DKECKICARP FTVFRWRPGR DARYKKTEIC QTCCKLKNVC QVCLLDLEYG LPVQVRDTAL
101: AINSNDAIPR SDVNREYFAE EHDRRARAGI DYDSSYGKAR PNDTILKLQR TAPYYKRNRA HVCSFFVRGE CTRGAECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVALKLL SKAGEMPSLT PPDDETIRTL YIGGLDNRIT EQDLRDQFYA HGEIESIRMV LQRAIAFVTY TTREGAEKAA EELANKLVIK GVRLKLMWGK
301: PQAPKPEEDE SGRQGQVSHG GLLPRAVISQ QQSGDQPQPP GMEGQQQQAA PASYYFNIPA PPAAERTLYP SMDPQRMGAI VKSQDGEGKP GPQQAGQAQP
401: SSSSAQGGYP APPPYYHGQY PPYYPPPPPY GGYMPPPRMP YPPQYPPYQP MLAQPAQAQA SSSQQPPQEG AGQQPPHGPP AQQQPQQPIQ N
Best Arabidopsis Sequence Match ( AT1G07360.1 )
(BLAST)
001: MAHRILRDHE ADGWERSDFP IICESCLGDN PYVRMTKANY DKECKICTRP FTVFRWRPGR DARYKKTEIC QTCCKLKNVC QVCLLDLEYG LPVQVRDTAL
101: NISTHDSIPK SDVNREYFAE EHDRKARAGL DYESSFGKMR PNDTILKLQR TTPYYKRNRA HVCSFFIRGE CTRGAECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVAMKLL GKAGEMGTLE SPDDESIKTL YVGGLNSRIL EQDIRDQFYA HGEIESIRIL ADKACAFVTY TSREGAEKAA QELSNRLVIN GQRLKLTWGR
301: PKPDQDGANQ QGGVAHSGLL PRAVISQQHN QPPPMQQYYM HPPPANQDKP YYPSMDPQRM GAVISTQEAG GSSTENNGAS SSSYMMPPHQ SYPPPPYGYM
401: PSPYQQQYPP NHHHQPSPMQ HYAPPPAAYP YPQQPGPGSR PAPSPTAVSA ISPDSAPAGS GAPSGSSQQA PDVSTATGSS Q
Arabidopsis Description
Zinc finger CCCH domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNV5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.