Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70237 | Canola | extracellular | 94.67 | 36.79 |
| AT5G04210.1 | Thale cress | cytosol | 42.67 | 16.58 |
| CDX70241 | Canola | cytosol | 62.67 | 11.84 |
| CDX70201 | Canola | nucleus | 33.33 | 8.83 |
| VIT_06s0004g06000.t01 | Wine grape | nucleus | 29.33 | 7.94 |
| CDY51359 | Canola | nucleus | 44.0 | 7.21 |
| CDX97876 | Canola | nucleus | 44.0 | 7.16 |
| CDX86491 | Canola | nucleus | 41.33 | 7.01 |
| CDY15609 | Canola | nucleus | 41.33 | 6.47 |
| GSMUA_Achr11P... | Banana | cytosol | 38.67 | 6.16 |
| KRH18690 | Soybean | nucleus | 37.33 | 6.0 |
| KRH73960 | Soybean | nucleus | 38.67 | 5.99 |
| Os07t0281000-01 | Rice | cytosol, nucleus, plastid | 38.67 | 5.97 |
| EER89290 | Sorghum | cytosol, nucleus, plastid | 38.67 | 5.91 |
| GSMUA_Achr8P23920_001 | Banana | cytosol, nucleus, plastid | 37.33 | 5.89 |
| Zm00001d045183_P001 | Maize | extracellular, plasma membrane | 38.67 | 5.88 |
| TraesCS7D01G131000.1 | Wheat | cytosol | 38.67 | 5.84 |
| TraesCS7B01G032400.1 | Wheat | nucleus | 38.67 | 5.84 |
| TraesCS7A01G131700.1 | Wheat | nucleus | 38.67 | 5.84 |
| KRG89828 | Soybean | nucleus | 37.33 | 5.82 |
| KRH14167 | Soybean | nucleus | 37.33 | 5.81 |
| Os06t0170500-01 | Rice | nucleus | 37.33 | 5.81 |
| EES07378 | Sorghum | cytosol, nucleus, plastid | 37.33 | 5.7 |
| CDY70348 | Canola | nucleus | 22.67 | 5.61 |
| CDY44880 | Canola | nucleus | 22.67 | 5.61 |
| HORVU7Hr1G027490.1 | Barley | cytosol, mitochondrion, nucleus | 38.67 | 5.43 |
| PGSC0003DMT400021046 | Potato | cytosol | 33.33 | 5.22 |
| Solyc04g017710.2.1 | Tomato | nucleus | 33.33 | 5.22 |
| Solyc10g079190.1.1 | Tomato | nucleus | 33.33 | 5.22 |
| VIT_06s0004g05990.t01 | Wine grape | cytosol | 12.0 | 4.11 |
| CDX72949 | Canola | nucleus | 5.33 | 3.08 |
| CDY53361 | Canola | nucleus | 10.67 | 2.61 |
| CDX70240 | Canola | cytosol | 1.33 | 0.49 |
Protein Annotations
| EnsemblPlants:CDY51311 | EnsemblPlantsGene:GSBRNA2T00003128001 | GO:A0A078IMV0 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:RBD_domain_sf | ProteinID:CDY51311 | ProteinID:CDY51311.1 | SUPFAM:SSF54928 | UniParc:UPI0004EE411D | UniProt:A0A078IMV0 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaCnng20560DBnaCnng20560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IMV0]
Coordinates
chrLK032984:+:53226..53821
Molecular Weight (calculated)
8567.3 Da
IEP (calculated)
9.721
GRAVY (calculated)
-0.465
Length
75 amino acids
Sequence
(BLAST)
(BLAST)
1: MAGARCPFAH KVPRVFDSRT GLDNPKTVEL LARNVYMGAV DPPIDQTLKT LYLRRLNSSV HEQHIRDRFS PYGEI
001: MAQIEDKSRK LDCIPICPLF DAGRQCTRGT MCLYRHEINR GLDCHGRSGL ENPFVLEVLA RACNTGPLKP PEDQSIKTLY IRRLINSSVL EQDIRDHFCP
101: YGEIESIVIF PHRGGGTCAF LTYTTRLAAE KAMLELSSWT DIKGQRVKLL WGPTEKWQHK MTGAAISSTQ EVGSSSSNTA DLVTKLVHSL EKL
101: YGEIESIVIF PHRGGGTCAF LTYTTRLAAE KAMLELSSWT DIKGQRVKLL WGPTEKWQHK MTGAAISSTQ EVGSSSSNTA DLVTKLVHSL EKL
Arabidopsis Description
CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9FYE0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.