CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
nucleus: 27291164
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73960	Soybean	nucleus	93.97	93.39
KRH14167	Soybean	nucleus	93.14	92.95
KRH18690	Soybean	nucleus	87.73	90.36
Solyc10g079190.1.1	Tomato	nucleus	77.55	77.87
PGSC0003DMT400021046	Potato	cytosol	77.13	77.45
Solyc04g017710.2.1	Tomato	nucleus	75.88	76.2
GSMUA_Achr11P...	Banana	cytosol	72.14	73.67
GSMUA_Achr8P23920_001	Banana	cytosol, nucleus, plastid	71.93	72.84
Os06t0170500-01	Rice	nucleus	72.56	72.41
Os07t0281000-01	Rice	cytosol, nucleus, plastid	72.14	71.4
VIT_06s0004g06000.t01	Wine grape	nucleus	40.96	71.12
EES07378	Sorghum	cytosol, nucleus, plastid	71.93	70.47
EER89290	Sorghum	cytosol, nucleus, plastid	71.52	70.06
Zm00001d045183_P001	Maize	extracellular, plasma membrane	71.31	69.57
TraesCS7B01G032400.1	Wheat	nucleus	71.31	69.01
TraesCS7D01G131000.1	Wheat	cytosol	71.31	69.01
TraesCS7A01G131700.1	Wheat	nucleus	70.89	68.61
HORVU7Hr1G027490.1	Barley	cytosol, mitochondrion, nucleus	71.31	64.23
CDY51311	Canola	nucleus	5.82	37.33
AT5G04210.1	Thale cress	cytosol	14.55	36.27
CDX70237	Canola	extracellular	13.93	34.72
Bra009465.1-P	Field mustard	cytosol	18.3	24.44
CDX70241	Canola	cytosol	18.5	22.42
CDX72949	Canola	nucleus	6.03	22.31
Bra009466.1-P	Field mustard	cytosol	18.92	21.62
CDX70240	Canola	cytosol	6.86	16.18

Protein Annotations

EntrezGene:100779917	MapMan:15.5.16	MapMan:16.4.5.2.1	Gene3D:3.30.70.330	Gene3D:4.10.1000.10	EMBL:ACUP02012283
EnsemblPlantsGene:GLYMA_20G050200	GO:GO:0000387	GO:GO:0000398	GO:GO:0000974	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0017070
GO:GO:0036002	GO:GO:0046872	GO:GO:0071006	GO:GO:0071007	UniProt:I1NE13	InterPro:IPR000504
InterPro:IPR000571	InterPro:IPR012677	EnsemblPlants:KRG89828	ProteinID:KRG89828	ProteinID:KRG89828.1	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF16131	PFscan:PS50102	PFscan:PS50103	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00356	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF90229	InterPro:Torus	UniParc:UPI000233DA39
InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:10218932..10223575

Molecular Weight (calculated)

53959.5 Da

IEP (calculated)

7.323

GRAVY (calculated)

-0.831

Length

481 amino acids

Sequence
(BLAST)

001: MAHRLLRDHE ADGWERSDFP IICESCLGDS PYVRMTKAEY DKECKICTRP FTVFRWRPGR DARYKKTEIC QTCSKLKNVC QVCLLDLEYG LPVQVRDTAL
101: SIDSNDAIPK SDVNREYFAE EHDRRARAGI DYESSYGKVR PNDTIMKLQR TTPYYKRNRA HICSFYIRGE CTRGAECPYR HEMPVTGELS QQNIKDRYYG
201: VNDPVALKLL GKAGEMSTLE APEDESIKTL YVGGLDARVT EQDLRDHFYA HGEIESIKMV LQRACAFVTY TTREGAEKAA EELSNKLVIK GLRLKLMWGR
301: PQTSKPESDG SDQARPQASV AHSGLLPRAV ISQQQNQDQA QGMLYYNNPP PPQQERSYYP SMDPQRMGAL VSSQDGPPGG PSGLGENKPG LEKQQMQHYA
401: HPMMPPQPGQ YHQYYPPYGY MPPPPPYHQY PPPPYNAAVA PSQPPAANHP YQHSMQPGSS QPGSSQAASA PAETGTSTSG S

Best Arabidopsis Sequence Match ( AT2G29580.1 )
(BLAST)

001: MAHRILRDHE ADGWERSDFP IICESCLGDN PYVRMTKANY DKECKICTRP FTVFRWRPGR DARYKKTEVC QTCCKLKNVC QVCLLDLEYG LPVQVRDTAL
101: NISTHDSIPK SDVNREFFAE EHDRKTRAGL DYESSFGKIR PNDTIRMLQR TTPYYKRNRA HICSFFIRGE CTRGDECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVALKLL GKAGEMGTLE SPEDQSIRTL YVGGLNSRVL EQDIRDQFYA HGEIESIRIL AEKACAFVTY TTREGAEKAA EELSNRLVVN GQRLKLTWGR
301: PQVPKPDQDG SNQQGSVAHS GLLPRAVISQ QQNQPPPMLQ YYMHPPPPQP PHQDRPFYPS MDPQRMGAVS SSKESGSSTS DNRGASSSSY TMPPHGHYPQ
401: HQPYPPPSYG GYMQPPYQQY PPYHHGHSQQ ADHDYPQQPG PGSRPNPPHP SSVSAPPPDS VSAAPSGSSQ QSADAAVTTG SSQ

Arabidopsis Description

Zinc finger CCCH domain-containing protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW36]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.