CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009466.1-P	Field mustard	cytosol	97.98	92.4
CDY51311	Canola	nucleus	11.84	62.67
CDX70237	Canola	extracellular	24.18	49.74
AT5G04210.1	Thale cress	cytosol	19.14	39.38
VIT_06s0004g06000.t01	Wine grape	nucleus	15.87	22.74
CDY51359	Canola	nucleus	22.17	19.21
CDX97876	Canola	nucleus	21.91	18.87
CDY15609	Canola	nucleus	22.67	18.79
KRG89828	Soybean	nucleus	22.42	18.5
Os06t0170500-01	Rice	nucleus	22.42	18.46
Os07t0281000-01	Rice	cytosol, nucleus, plastid	22.42	18.31
GSMUA_Achr11P...	Banana	cytosol	21.66	18.26
EER89290	Sorghum	cytosol, nucleus, plastid	22.42	18.13
KRH14167	Soybean	nucleus	21.91	18.05
KRH73960	Soybean	nucleus	21.91	17.98
EES07378	Sorghum	cytosol, nucleus, plastid	22.17	17.92
TraesCS7B01G032400.1	Wheat	nucleus	22.42	17.91
TraesCS7D01G131000.1	Wheat	cytosol	22.42	17.91
GSMUA_Achr8P23920_001	Banana	cytosol, nucleus, plastid	21.41	17.89
TraesCS7A01G131700.1	Wheat	nucleus	22.17	17.71
Zm00001d045183_P001	Maize	extracellular, plasma membrane	21.91	17.65
KRH18690	Soybean	nucleus	20.4	17.34
Solyc04g017710.2.1	Tomato	nucleus	20.65	17.12
CDX72949	Canola	nucleus	5.54	16.92
PGSC0003DMT400021046	Potato	cytosol	20.15	16.7
HORVU7Hr1G027490.1	Barley	cytosol, mitochondrion, nucleus	22.42	16.67
Solyc10g079190.1.1	Tomato	nucleus	19.9	16.49
CDX86491	Canola	nucleus	18.14	16.29
CDX70201	Canola	nucleus	10.83	15.19
CDY70348	Canola	nucleus	8.56	11.22
CDY44880	Canola	nucleus	8.56	11.22
VIT_06s0004g05990.t01	Wine grape	cytosol	6.05	10.96
CDY53361	Canola	nucleus	7.81	10.13
CDX70240	Canola	cytosol	2.52	4.9

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	GO:A0A078BZW3	EnsemblPlants:CDX70241	ProteinID:CDX70241	ProteinID:CDX70241.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00136376001	InterPro:IPR000504
InterPro:IPR000571	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00642	PFscan:PS50102
PFscan:PS50103	PANTHER:PTHR14089	PANTHER:PTHR14089:SF6	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00356
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EE4995	InterPro:Znf_CCCH	SEG:seg	:

Description

BnaA10g25900D

Coordinates

chrLK031790:-:3724414..3726216

Molecular Weight (calculated)

43065.4 Da

IEP (calculated)

7.404

GRAVY (calculated)

-0.732

Length

397 amino acids

Sequence
(BLAST)

001: MKDQRNRILS RSKSKLGVYM QSQVDRFRMN RPAICGFFES GRTCSAGDEC PFSHSFPRNS NAHRTTGLSD PNPDPGTVDL LFKMVYMGPL DPPRDQTVKT
101: LYLRRLNSNV QEEHLRDRFS PYGEIESIVY FGMRGVSCAF LTYTTRQAAE KAMLEHSSWV DVNGQMLKLL WGTHRIPKDA ELVGGSNLVK HDGGGFAWVK
201: ENKDGGQVPY WCKRGYGSSE QLGGWGFDGR RGWDAGIGGS NWAKVNAVGG FGECFNWGRA NDGISSWGKD NYSSGGSNWG NQVVGSSWGQ QDGCGFAWGS
301: QNNNYGGGGP SWSSLGDGGR GFGGRRGYWG SWDFSSKNTG GGWEANTGGG WEANTGGGWE ANTGGGWETN TGDDDAWGCK PNVGASSSSG SWVTVDQ

Best Arabidopsis Sequence Match ( AT5G04210.1 )
(BLAST)

001: MAQIEDKSRK LDCIPICPLF DAGRQCTRGT MCLYRHEINR GLDCHGRSGL ENPFVLEVLA RACNTGPLKP PEDQSIKTLY IRRLINSSVL EQDIRDHFCP
101: YGEIESIVIF PHRGGGTCAF LTYTTRLAAE KAMLELSSWT DIKGQRVKLL WGPTEKWQHK MTGAAISSTQ EVGSSSSNTA DLVTKLVHSL EKL

Arabidopsis Description

CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9FYE0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.