Factsheet for PGSC0003DMT400021046

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g079190.1.1	Tomato	nucleus	98.33	98.33
KRH18690	Soybean	nucleus	75.99	77.94
KRG89828	Soybean	nucleus	77.45	77.13
KRH14167	Soybean	nucleus	75.78	75.31
KRH73960	Soybean	nucleus	75.16	74.38
GSMUA_Achr8P23920_001	Banana	cytosol, nucleus, plastid	73.49	74.11
GSMUA_Achr11P...	Banana	cytosol	72.86	74.1
Os07t0281000-01	Rice	cytosol, nucleus, plastid	72.86	71.81
Os06t0170500-01	Rice	nucleus	71.82	71.37
EER89290	Sorghum	cytosol, nucleus, plastid	72.65	70.88
EES07378	Sorghum	cytosol, nucleus, plastid	72.65	70.88
VIT_06s0004g06000.t01	Wine grape	nucleus	40.92	70.76
Zm00001d045183_P001	Maize	extracellular, plasma membrane	71.61	69.57
TraesCS7A01G131700.1	Wheat	nucleus	71.4	68.81
TraesCS7B01G032400.1	Wheat	nucleus	71.4	68.81
TraesCS7D01G131000.1	Wheat	cytosol	71.4	68.81
HORVU7Hr1G027490.1	Barley	cytosol, mitochondrion, nucleus	71.19	63.86
PGSC0003DMT400075131	Potato	cytosol	12.53	61.86
CDX70237	Canola	extracellular	13.99	34.72
AT5G04210.1	Thale cress	cytosol	13.78	34.2
CDY51311	Canola	nucleus	5.22	33.33
Bra009465.1-P	Field mustard	cytosol	19.21	25.56
CDX72949	Canola	nucleus	5.85	21.54
CDX70241	Canola	cytosol	16.7	20.15
Bra009466.1-P	Field mustard	cytosol	17.33	19.71
CDX70240	Canola	cytosol	7.1	16.67

Protein Annotations

EntrezGene:102588254	MapMan:15.5.16	MapMan:16.4.5.2.1	Gene3D:3.30.70.330	Gene3D:4.10.1000.10	GO:GO:0000398
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0046872	InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677
UniProt:M1AEI1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF16131	EnsemblPlantsGene:PGSC0003DMG400008145	PGSC:PGSC0003DMG400008145
EnsemblPlants:PGSC0003DMT400021046	PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR14089	PANTHER:PTHR14089:SF6	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00356	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF90229	InterPro:Torus
UniParc:UPI000294D0F1	RefSeq:XP_006351235.1	RefSeq:XP_015165894.1	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg

Description

RNA-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008145]

Coordinates

chr10:+:58562768..58568962

Molecular Weight (calculated)

53773.4 Da

IEP (calculated)

7.849

GRAVY (calculated)

-0.796

Length

479 amino acids

Sequence
(BLAST)

001: MAHRLLRDAE ADGWERSDFP IICESCLGDS PYVRMTKADY DKECKICTRP FTVFKWRPGR DARYKKSEIC QTCSKLKNVC QVCLLDLEYG LPVQVRDTAL
101: SINSNDAIPK SDVNREYFAE EHDRRARAGI DYESSYGKVR ANDTILKLQR TTPYYKRNRA HVCSFFIRGQ CTRGLECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVALKLL NKAGEMPSLE PPDDESIRTL YVGGVDARIT EQDLRDHFYA HGEIESIKMV VQRGCAFVTY TTREGAVKAA EELANKLVIK GLRLKLLWGR
301: PQVPKPESEV SDEARQQAAL THSGLLPRAV VSQQQNQPLQ PPGTQDQPPS MPYFNIPPMP QQDRPYYPSM DPQRMGAVIA SQEGASSSTT GSGPGENKIG
401: SDHQQGHHYA YPPGGPPPPG QFYPPYYRPP YGYMPPPPPP YHQYPPPPYQ ATAPPPPSAQ QAAHQQNPRP AAAATTQQP

Best Arabidopsis Sequence Match ( AT1G07360.1 )
(BLAST)

001: MAHRILRDHE ADGWERSDFP IICESCLGDN PYVRMTKANY DKECKICTRP FTVFRWRPGR DARYKKTEIC QTCCKLKNVC QVCLLDLEYG LPVQVRDTAL
101: NISTHDSIPK SDVNREYFAE EHDRKARAGL DYESSFGKMR PNDTILKLQR TTPYYKRNRA HVCSFFIRGE CTRGAECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVAMKLL GKAGEMGTLE SPDDESIKTL YVGGLNSRIL EQDIRDQFYA HGEIESIRIL ADKACAFVTY TSREGAEKAA QELSNRLVIN GQRLKLTWGR
301: PKPDQDGANQ QGGVAHSGLL PRAVISQQHN QPPPMQQYYM HPPPANQDKP YYPSMDPQRM GAVISTQEAG GSSTENNGAS SSSYMMPPHQ SYPPPPYGYM
401: PSPYQQQYPP NHHHQPSPMQ HYAPPPAAYP YPQQPGPGSR PAPSPTAVSA ISPDSAPAGS GAPSGSSQQA PDVSTATGSS Q

Arabidopsis Description

Zinc finger CCCH domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.