Factsheet for AT5G04210.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51311	Canola	nucleus	16.58	42.67
CDX70237	Canola	extracellular	37.82	37.82
Bra009465.1-P	Field mustard	cytosol	38.86	20.83
VIT_06s0004g06000.t01	Wine grape	nucleus	29.02	20.22
CDX70241	Canola	cytosol	39.38	19.14
Bra009466.1-P	Field mustard	cytosol	39.38	18.05
AT2G29580.1	Thale cress	nucleus	38.34	15.32
KRH18690	Soybean	nucleus	36.79	15.2
KRH14167	Soybean	nucleus	36.79	14.73
KRH73960	Soybean	nucleus	36.79	14.67
KRG89828	Soybean	nucleus	36.27	14.55
GSMUA_Achr8P23920_001	Banana	cytosol, nucleus, plastid	35.23	14.32
GSMUA_Achr11P...	Banana	cytosol	34.72	14.23
AT1G07360.1	Thale cress	nucleus	35.23	14.14
PGSC0003DMT400021046	Potato	cytosol	34.2	13.78
Solyc10g079190.1.1	Tomato	nucleus	33.68	13.57
Os06t0170500-01	Rice	nucleus	33.68	13.49
EES07378	Sorghum	cytosol, nucleus, plastid	34.2	13.44
Solyc04g017710.2.1	Tomato	nucleus	33.16	13.36
EER89290	Sorghum	cytosol, nucleus, plastid	33.68	13.24
Zm00001d045183_P001	Maize	extracellular, plasma membrane	33.68	13.18
Os07t0281000-01	Rice	cytosol, nucleus, plastid	33.16	13.17
TraesCS7A01G131700.1	Wheat	nucleus	33.16	12.88
TraesCS7B01G032400.1	Wheat	nucleus	33.16	12.88
TraesCS7D01G131000.1	Wheat	cytosol	33.16	12.88
AT5G07060.1	Thale cress	nucleus	22.8	12.12
HORVU7Hr1G027490.1	Barley	cytosol, mitochondrion, nucleus	33.16	11.98
VIT_06s0004g05990.t01	Wine grape	cytosol	8.81	7.76
CDX70240	Canola	cytosol	5.7	5.39

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:830300	ProteinID:AED90711.1	ArrayExpress:AT5G04210	EnsemblPlantsGene:AT5G04210
RefSeq:AT5G04210	TAIR:AT5G04210	RefSeq:AT5G04210-TAIR-G	EnsemblPlants:AT5G04210.1	TAIR:AT5G04210.1	Unigene:At.50700
ProteinID:CAC05503.1	GO:GO:0000387	GO:GO:0000398	GO:GO:0000974	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0017070
GO:GO:0036002	GO:GO:0046872	GO:GO:0071006	GO:GO:0071007	InterPro:IPR000504	InterPro:IPR000571
InterPro:IPR012677	RefSeq:NP_196041.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PO:PO:0000084	PO:PO:0000293
PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR14089	PANTHER:PTHR14089:SF6	UniProt:Q9FYE0	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00000A9EE8	InterPro:Znf_CCCH	:

Description

CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9FYE0]

Coordinates

chr5:-:1155049..1155724

Molecular Weight (calculated)

21578.0 Da

IEP (calculated)

8.003

GRAVY (calculated)

-0.290

Length

193 amino acids

Sequence
(BLAST)

001: MAQIEDKSRK LDCIPICPLF DAGRQCTRGT MCLYRHEINR GLDCHGRSGL ENPFVLEVLA RACNTGPLKP PEDQSIKTLY IRRLINSSVL EQDIRDHFCP
101: YGEIESIVIF PHRGGGTCAF LTYTTRLAAE KAMLELSSWT DIKGQRVKLL WGPTEKWQHK MTGAAISSTQ EVGSSSSNTA DLVTKLVHSL EKL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.