Factsheet for Solyc04g017710.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 28394025
endoplasmic reticulum: 29145071

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g079190.1.1	Tomato	nucleus	85.8	85.8
KRH18690	Soybean	nucleus	75.57	77.52
KRG89828	Soybean	nucleus	76.2	75.88
KRH14167	Soybean	nucleus	75.57	75.1
KRH73960	Soybean	nucleus	74.95	74.17
GSMUA_Achr11P...	Banana	cytosol	72.86	74.1
GSMUA_Achr8P23920_001	Banana	cytosol, nucleus, plastid	73.28	73.89
Os07t0281000-01	Rice	cytosol, nucleus, plastid	72.86	71.81
Os06t0170500-01	Rice	nucleus	72.23	71.78
EER89290	Sorghum	cytosol, nucleus, plastid	73.28	71.49
EES07378	Sorghum	cytosol, nucleus, plastid	73.28	71.49
Zm00001d045183_P001	Maize	extracellular, plasma membrane	72.44	70.39
TraesCS7A01G131700.1	Wheat	nucleus	72.65	70.02
TraesCS7D01G131000.1	Wheat	cytosol	72.44	69.82
VIT_06s0004g06000.t01	Wine grape	nucleus	40.29	69.68
TraesCS7B01G032400.1	Wheat	nucleus	72.23	69.62
HORVU7Hr1G027490.1	Barley	cytosol, mitochondrion, nucleus	72.23	64.79
CDY51311	Canola	nucleus	5.22	33.33
AT5G04210.1	Thale cress	cytosol	13.36	33.16
CDX70237	Canola	extracellular	12.73	31.61
Bra009465.1-P	Field mustard	cytosol	17.95	23.89
CDX72949	Canola	nucleus	6.05	22.31
CDX70241	Canola	cytosol	17.12	20.65
Bra009466.1-P	Field mustard	cytosol	17.75	20.19
CDX70240	Canola	cytosol	7.1	16.67

Protein Annotations

MapMan:15.5.16	MapMan:16.4.5.2.1	Gene3D:3.30.70.330	Gene3D:4.10.1000.10	GO:GO:0000387	GO:GO:0000398
GO:GO:0000974	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0017070	GO:GO:0036002	GO:GO:0046872	GO:GO:0071006
GO:GO:0071007	InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677	UniProt:K4BQH1	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF16131	PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR14089	PANTHER:PTHR14089:SF6
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00356	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF90229
EnsemblPlantsGene:Solyc04g017710.2	EnsemblPlants:Solyc04g017710.2.1	InterPro:Torus	UniParc:UPI0002767341	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:7786866..7792144

Molecular Weight (calculated)

53828.6 Da

IEP (calculated)

7.825

GRAVY (calculated)

-0.796

Length

479 amino acids

Sequence
(BLAST)

001: MAHRLLRDAE ADGWERSDFP IICESCLGDS PYVRMTKADY DKECKICTRP FTVFRWRPGR DARYKKSEIC QTCSKLKNVC QVCLLDLEYG LPVQVRDTAL
101: SINSNDAIPK SDVNREYFAE EHDRRARAGI DYESSYGKVR ANDTILKLQR TTPYYKRNRA HVCSFYIRGQ CTRGLECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVAMKLL NKAGEMPSLE PPDDESIRTL YVGGVDARIS EQDLRDQFYA HGEIESIKMV LQRSCAFVTY TTREGAVKAA EELANKLVIK GLRLKLLWGR
301: PQAPKPDTEL SDEARQQAAV THSGLLPRAV ISQQNQLPPP PGTQEQPPQP MPYFNIPPML QQERAYYPSM DPQRMGAVVS SQDGASSSAA GSGPENKIGS
401: EKHPQGQHYA YPPAPPPQGQ FYPPYYPPPP YGYMPPPPPP HYQQYPPPYQ GARPPPPPPT GEQAAFQQKP QPAGAAAQP

Best Arabidopsis Sequence Match ( AT1G07360.1 )
(BLAST)

001: MAHRILRDHE ADGWERSDFP IICESCLGDN PYVRMTKANY DKECKICTRP FTVFRWRPGR DARYKKTEIC QTCCKLKNVC QVCLLDLEYG LPVQVRDTAL
101: NISTHDSIPK SDVNREYFAE EHDRKARAGL DYESSFGKMR PNDTILKLQR TTPYYKRNRA HVCSFFIRGE CTRGAECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVAMKLL GKAGEMGTLE SPDDESIKTL YVGGLNSRIL EQDIRDQFYA HGEIESIRIL ADKACAFVTY TSREGAEKAA QELSNRLVIN GQRLKLTWGR
301: PKPDQDGANQ QGGVAHSGLL PRAVISQQHN QPPPMQQYYM HPPPANQDKP YYPSMDPQRM GAVISTQEAG GSSTENNGAS SSSYMMPPHQ SYPPPPYGYM
401: PSPYQQQYPP NHHHQPSPMQ HYAPPPAAYP YPQQPGPGSR PAPSPTAVSA ISPDSAPAGS GAPSGSSQQA PDVSTATGSS Q

Arabidopsis Description

Zinc finger CCCH domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.