Factsheet for GSMUA_Achr8P23920_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	86.53	87.26
VIT_06s0004g05990.t01	Wine grape	cytosol	40.21	87.21
Os06t0170500-01	Rice	nucleus	76.42	75.31
Os07t0281000-01	Rice	cytosol, nucleus, plastid	76.63	74.9
EES07378	Sorghum	cytosol, nucleus, plastid	76.42	73.93
EER89290	Sorghum	cytosol, nucleus, plastid	76.0	73.52
PGSC0003DMT400021046	Potato	cytosol	74.11	73.49
Solyc04g017710.2.1	Tomato	nucleus	73.89	73.28
Solyc10g079190.1.1	Tomato	nucleus	73.47	72.86
KRH18690	Soybean	nucleus	71.58	72.81
Zm00001d045183_P001	Maize	extracellular, plasma membrane	75.16	72.41
TraesCS7B01G032400.1	Wheat	nucleus	75.58	72.23
TraesCS7D01G131000.1	Wheat	cytosol	75.58	72.23
TraesCS7A01G131700.1	Wheat	nucleus	75.37	72.03
KRG89828	Soybean	nucleus	72.84	71.93
KRH14167	Soybean	nucleus	72.0	70.95
KRH73960	Soybean	nucleus	71.79	70.45
HORVU7Hr1G027490.1	Barley	cytosol, mitochondrion, nucleus	76.21	67.79
AT1G07360.1	Thale cress	nucleus	64.84	64.03
CDY15609	Canola	nucleus	64.42	63.88
Bra030679.1-P	Field mustard	nucleus	64.42	63.75
VIT_06s0004g06000.t01	Wine grape	nucleus	36.84	63.18
Bra009429.1-P	Field mustard	nucleus	42.11	63.09
AT2G29580.1	Thale cress	nucleus	64.0	62.94
Bra039988.1-P	Field mustard	nucleus	60.0	62.91
CDY51359	Canola	nucleus	60.21	62.45
CDX86491	Canola	nucleus	58.11	62.44
AT5G07060.1	Thale cress	nucleus	47.58	62.26
CDX97876	Canola	nucleus	60.21	62.04
CDX70201	Canola	nucleus	36.0	60.42
PGSC0003DMT400075131	Potato	cytosol	12.21	59.79
CDY70348	Canola	nucleus	36.42	57.1
CDY44880	Canola	nucleus	36.42	57.1
CDY53361	Canola	nucleus	30.95	48.04
CDY51311	Canola	nucleus	5.89	37.33
AT5G04210.1	Thale cress	cytosol	14.32	35.23
CDX70237	Canola	extracellular	13.26	32.64
Bra009465.1-P	Field mustard	cytosol	18.11	23.89
CDX70241	Canola	cytosol	17.89	21.41
Bra009466.1-P	Field mustard	cytosol	18.32	20.67
CDX72949	Canola	nucleus	5.47	20.0
CDX70240	Canola	cytosol	7.37	17.16

Protein Annotations

MapMan:15.5.16	MapMan:16.4.5.2.1	Gene3D:3.30.70.330	Gene3D:4.10.1000.10	GO:GO:0000398	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr8G23920_001	EnsemblPlants:GSMUA_Achr8P23920_001	EnsemblPlants:GSMUA_Achr8T23920_001	InterPro:IPR000504
InterPro:IPR000571	InterPro:IPR012677	UniProt:M0TT45	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF16131
PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR14089	PANTHER:PTHR14089:SF6	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00356	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF90229	InterPro:Torus	UniParc:UPI000296F434
InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:	:	:

Description

Zinc finger CCCH domain-containing protein 40 [Source:GMGC_GENE;Acc:GSMUA_Achr8G23920_001]

Coordinates

chr8:+:28247641..28252799

Molecular Weight (calculated)

53548.4 Da

IEP (calculated)

7.972

GRAVY (calculated)

-0.809

Length

475 amino acids

Sequence
(BLAST)

001: MAHRLLRDAQ ADGWERSDFP IICESCLGDN PYIRMTKADY DKECKICKRP FTVFRWRPGR DARYKKTEIC QTCCKLKNVC QVCVLDLEYG LPVQVRDTAL
101: AINSNDAIPK SDVNREYFAE EHDRRARAGI DYESSYGKVL PNDTILKLQR TTPYYKRNRA HVCSFYLRGE CTRGAECPYR HEMPEIGELS QQNIKDRYYG
201: VNDPVAQKLL SKAGEMPSLN PPEDESIKTL YVGGLDARIS EQDLRDHFYA HGEIESIRMV LQRACAFVTY TTRDAAEKAA EELANKLVIK GLRLKLMWGR
301: PQASKPEGEA QDDDAGRQGV ATHAGLLPRA VISQQQSNHQ PLPPGTENHQ QPPLNYFNIP APPQAARTFY PSTDPQRMGA LVPTQEGSNN KNGSEKQPEQ
401: QAPNLHGHAF PMAPPHPQGS QYRPPYYPPY GYMAPLPPPY QQYPPYPPMM APRPPPPSAP QPAVQQYTQG PPGPS

Best Arabidopsis Sequence Match ( AT1G07360.1 )
(BLAST)

001: MAHRILRDHE ADGWERSDFP IICESCLGDN PYVRMTKANY DKECKICTRP FTVFRWRPGR DARYKKTEIC QTCCKLKNVC QVCLLDLEYG LPVQVRDTAL
101: NISTHDSIPK SDVNREYFAE EHDRKARAGL DYESSFGKMR PNDTILKLQR TTPYYKRNRA HVCSFFIRGE CTRGAECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVAMKLL GKAGEMGTLE SPDDESIKTL YVGGLNSRIL EQDIRDQFYA HGEIESIRIL ADKACAFVTY TSREGAEKAA QELSNRLVIN GQRLKLTWGR
301: PKPDQDGANQ QGGVAHSGLL PRAVISQQHN QPPPMQQYYM HPPPANQDKP YYPSMDPQRM GAVISTQEAG GSSTENNGAS SSSYMMPPHQ SYPPPPYGYM
401: PSPYQQQYPP NHHHQPSPMQ HYAPPPAAYP YPQQPGPGSR PAPSPTAVSA ISPDSAPAGS GAPSGSSQQA PDVSTATGSS Q

Arabidopsis Description

Zinc finger CCCH domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.