CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44880	Canola	nucleus	100.0	100.0
CDX70201	Canola	nucleus	70.96	75.97
AT5G07060.1	Thale cress	nucleus	59.41	49.59
CDX86491	Canola	nucleus	61.39	42.08
CDY15609	Canola	nucleus	62.05	39.25
CDY51359	Canola	nucleus	57.1	37.77
CDX97876	Canola	nucleus	57.1	37.53
GSMUA_Achr11P...	Banana	cytosol	58.09	37.37
Os06t0170500-01	Rice	nucleus	59.41	37.34
GSMUA_Achr8P23920_001	Banana	cytosol, nucleus, plastid	57.1	36.42
EER89290	Sorghum	cytosol, nucleus, plastid	58.75	36.25
Os07t0281000-01	Rice	cytosol, nucleus, plastid	58.09	36.21
Zm00001d045183_P001	Maize	extracellular, plasma membrane	58.75	36.11
EES07378	Sorghum	cytosol, nucleus, plastid	58.42	36.05
TraesCS7A01G131700.1	Wheat	nucleus	57.43	35.01
TraesCS7B01G032400.1	Wheat	nucleus	57.43	35.01
TraesCS7D01G131000.1	Wheat	cytosol	57.43	35.01
HORVU7Hr1G027490.1	Barley	cytosol, mitochondrion, nucleus	57.43	32.58
CDY53361	Canola	nucleus	31.68	31.37
CDY51311	Canola	nucleus	5.61	22.67
PGSC0003DMT400075131	Potato	cytosol	6.93	21.65
CDX70240	Canola	cytosol	10.56	15.69
CDX70237	Canola	extracellular	8.91	13.99
CDX70241	Canola	cytosol	11.22	8.56
CDX72949	Canola	nucleus	2.64	6.15

Protein Annotations

EnsemblPlants:CDY70348	EnsemblPlantsGene:GSBRNA2T00098209001	GO:GO:0000398	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	PANTHER:PTHR14089	PANTHER:PTHR14089:SF6	ProteinID:CDY44880.1	ProteinID:CDY70348	ProteinID:CDY70348.1
SEG:seg	UniParc:UPI0004EE7A7E	UniProt:A0A078JS06	MapMan:15.5.16	MapMan:16.4.5.2.1	:

Description

BnaAnng33400DBnaAnng33400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JS06]

Coordinates

chrLK041845:-:1050..2513

Molecular Weight (calculated)

35068.6 Da

IEP (calculated)

7.668

GRAVY (calculated)

-0.757

Length

303 amino acids

Sequence
(BLAST)

001: MAQRILRDHE ANRCERSDFP ILCQSCLGDN PYLRIEWFNM SLESSFQALA NFDKECKVCT RPFTVFRWRP GRAARYKKTE ICQTCSKLEN VCQVCILDLE
101: YGLPVQVRDT TLNITSHDSI PRSNVNREYF AEEHERMTRA GLDCDSSFVK MRPNDTLMNL QRSEPHYGKN KPHVCSFNTI DRYYGSAFMH VKQLLRKASE
201: TSTLEPPEDE SIKTLYIGGL NSGKILEHDI RDHWKYQEGS VAQCGLLPPT MQHQYNMHSA PPNQERPYYP SMDPQRMGGL STNRNNGASY LMPPHQPYTP
301: PPY

Best Arabidopsis Sequence Match ( AT1G07360.1 )
(BLAST)

001: MAHRILRDHE ADGWERSDFP IICESCLGDN PYVRMTKANY DKECKICTRP FTVFRWRPGR DARYKKTEIC QTCCKLKNVC QVCLLDLEYG LPVQVRDTAL
101: NISTHDSIPK SDVNREYFAE EHDRKARAGL DYESSFGKMR PNDTILKLQR TTPYYKRNRA HVCSFFIRGE CTRGAECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVAMKLL GKAGEMGTLE SPDDESIKTL YVGGLNSRIL EQDIRDQFYA HGEIESIRIL ADKACAFVTY TSREGAEKAA QELSNRLVIN GQRLKLTWGR
301: PKPDQDGANQ QGGVAHSGLL PRAVISQQHN QPPPMQQYYM HPPPANQDKP YYPSMDPQRM GAVISTQEAG GSSTENNGAS SSSYMMPPHQ SYPPPPYGYM
401: PSPYQQQYPP NHHHQPSPMQ HYAPPPAAYP YPQQPGPGSR PAPSPTAVSA ISPDSAPAGS GAPSGSSQQA PDVSTATGSS Q

Arabidopsis Description

Zinc finger CCCH domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.