Factsheet for TraesCS7D01G131000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G131700.1	Wheat	nucleus	98.79	98.79
TraesCS7B01G032400.1	Wheat	nucleus	98.59	98.59
HORVU7Hr1G027490.1	Barley	cytosol, mitochondrion, nucleus	98.39	91.57
Os06t0170500-01	Rice	nucleus	85.31	87.97
Os07t0281000-01	Rice	cytosol, nucleus, plastid	85.11	87.04
EES07378	Sorghum	cytosol, nucleus, plastid	85.11	86.15
EER89290	Sorghum	cytosol, nucleus, plastid	84.31	85.34
VIT_06s0004g05990.t01	Wine grape	cytosol	37.42	84.93
Zm00001d045183_P001	Maize	extracellular, plasma membrane	83.9	84.58
GSMUA_Achr11P...	Banana	cytosol	73.44	77.49
GSMUA_Achr8P23920_001	Banana	cytosol, nucleus, plastid	72.23	75.58
KRH18690	Soybean	nucleus	68.41	72.81
Solyc04g017710.2.1	Tomato	nucleus	69.82	72.44
PGSC0003DMT400021046	Potato	cytosol	68.81	71.4
KRG89828	Soybean	nucleus	69.01	71.31
Solyc10g079190.1.1	Tomato	nucleus	68.61	71.19
KRH14167	Soybean	nucleus	68.81	70.95
KRH73960	Soybean	nucleus	68.21	70.04
CDY15609	Canola	nucleus	63.18	65.55
AT1G07360.1	Thale cress	nucleus	63.18	65.28
Bra030679.1-P	Field mustard	nucleus	62.98	65.21
Bra009429.1-P	Field mustard	nucleus	41.05	64.35
CDX86491	Canola	nucleus	57.14	64.25
CDY51359	Canola	nucleus	59.15	64.19
AT2G29580.1	Thale cress	nucleus	62.17	63.98
Bra039988.1-P	Field mustard	nucleus	57.95	63.58
CDX97876	Canola	nucleus	58.95	63.56
AT5G07060.1	Thale cress	nucleus	45.07	61.71
CDX70201	Canola	nucleus	35.01	61.48
VIT_06s0004g06000.t01	Wine grape	nucleus	33.0	59.21
PGSC0003DMT400075131	Potato	cytosol	11.27	57.73
CDY44880	Canola	nucleus	35.01	57.43
CDY70348	Canola	nucleus	35.01	57.43
CDY53361	Canola	nucleus	29.18	47.39
CDY51311	Canola	nucleus	5.84	38.67
CDX70237	Canola	extracellular	13.08	33.68
AT5G04210.1	Thale cress	cytosol	12.88	33.16
Bra009465.1-P	Field mustard	cytosol	17.71	24.44
CDX70241	Canola	cytosol	17.91	22.42
Bra009466.1-P	Field mustard	cytosol	18.51	21.85
CDX72949	Canola	nucleus	5.63	21.54
CDX70240	Canola	cytosol	6.84	16.67

Protein Annotations

MapMan:15.5.16	MapMan:16.4.5.2.1	Gene3D:3.30.70.330	Gene3D:4.10.1000.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0046872	InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF16131	PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR14089	PANTHER:PTHR14089:SF6
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00356	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF90229
InterPro:Torus	EnsemblPlantsGene:TraesCS7D01G131000	EnsemblPlants:TraesCS7D01G131000.1	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	TIGR:cd12224
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7D:-:83091784..83095373

Molecular Weight (calculated)

55349.4 Da

IEP (calculated)

7.956

GRAVY (calculated)

-0.791

Length

497 amino acids

Sequence
(BLAST)

001: MAHRLLRDAQ ADGWERSDFP IICESCLGDN PYVRMLRAEY DKECKICARP FTVFRWRPGR DARYKKTEIC QTCCKLKNVC QVCLLDLEYG LPVQVRDTAL
101: AINSNDAIPR SDVNREYFAE EHDRKAAAGI DYDSSYGKAR PNDTILKLQR TSPYYKRNRA HVCSFYVRGE CTRGAECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVALKLL GKAGEMPSLQ PPDDETIRTL YIGGLDNRVS EQDLRDQFYA HGEIESIRMV IQRACAFVTY TTREGAERAA EELANKLVIK GVRLKLMWGK
301: PQAPRPDDDE AGRQGHVSHG GLLPRAVISQ QHSSDQPQPP GMEGQQQVAP QGSGYFNIPP PPAVDQRMYP SMDPQRMGAV VRSQEGDGSK PGPQHAGQAQ
401: ASSSSGQGYL MRPPLPPYYQ GAQYPPYYPP PPYGGGYMAP PRMPYPPQYP PYRPMLAPPA QQPQGSSSQQ PAPVPAGQQQ AQAPPAQQQP PAAAAQN

Best Arabidopsis Sequence Match ( AT1G07360.1 )
(BLAST)

001: MAHRILRDHE ADGWERSDFP IICESCLGDN PYVRMTKANY DKECKICTRP FTVFRWRPGR DARYKKTEIC QTCCKLKNVC QVCLLDLEYG LPVQVRDTAL
101: NISTHDSIPK SDVNREYFAE EHDRKARAGL DYESSFGKMR PNDTILKLQR TTPYYKRNRA HVCSFFIRGE CTRGAECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVAMKLL GKAGEMGTLE SPDDESIKTL YVGGLNSRIL EQDIRDQFYA HGEIESIRIL ADKACAFVTY TSREGAEKAA QELSNRLVIN GQRLKLTWGR
301: PKPDQDGANQ QGGVAHSGLL PRAVISQQHN QPPPMQQYYM HPPPANQDKP YYPSMDPQRM GAVISTQEAG GSSTENNGAS SSSYMMPPHQ SYPPPPYGYM
401: PSPYQQQYPP NHHHQPSPMQ HYAPPPAAYP YPQQPGPGSR PAPSPTAVSA ISPDSAPAGS GAPSGSSQQA PDVSTATGSS Q

Arabidopsis Description

Zinc finger CCCH domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.