Factsheet for Bra009429.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70201	Canola	nucleus	83.6	93.64
AT5G07060.1	Thale cress	nucleus	66.88	58.4
Bra030679.1-P	Field mustard	nucleus	68.45	45.21
Bra039988.1-P	Field mustard	nucleus	63.72	44.59
GSMUA_Achr11P...	Banana	cytosol	64.98	43.74
Os06t0170500-01	Rice	nucleus	65.3	42.95
GSMUA_Achr8P23920_001	Banana	cytosol, nucleus, plastid	63.09	42.11
Os07t0281000-01	Rice	cytosol, nucleus, plastid	64.04	41.77
EER89290	Sorghum	cytosol, nucleus, plastid	64.67	41.75
EES07378	Sorghum	cytosol, nucleus, plastid	64.35	41.55
Zm00001d045183_P001	Maize	extracellular, plasma membrane	64.35	41.38
PGSC0003DMT400075131	Potato	cytosol	12.62	41.24
TraesCS7A01G131700.1	Wheat	nucleus	64.35	41.05
TraesCS7B01G032400.1	Wheat	nucleus	64.35	41.05
TraesCS7D01G131000.1	Wheat	cytosol	64.35	41.05
HORVU7Hr1G027490.1	Barley	cytosol, mitochondrion, nucleus	64.35	38.2
Bra009465.1-P	Field mustard	cytosol	21.14	18.61
Bra009466.1-P	Field mustard	cytosol	13.88	10.45

Protein Annotations

EnsemblPlants:Bra009429.1	EnsemblPlants:Bra009429.1-P	EnsemblPlantsGene:Bra009429	GO:GO:0000398	GO:GO:0003674	GO:GO:0005488
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0046872	InterPro:IPR000571
InterPro:Znf_CCCH	PANTHER:PTHR14089	PANTHER:PTHR14089:SF6	PFscan:PS50103	SEG:seg	UniParc:UPI0002547873
UniProt:M4CYY2	MapMan:15.5.16	MapMan:16.4.5.2.1	:	:	:

Description

AT1G07360 (E=1e-112) | zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein

Coordinates

chrA10:+:16609138..16610494

Molecular Weight (calculated)

36003.8 Da

IEP (calculated)

7.461

GRAVY (calculated)

-0.682

Length

317 amino acids

Sequence
(BLAST)

001: MAQRILRDHE AYRCERSDFP ILCQSCLGDN PYLRMALANF DKECKVCTRP FTVFRWRPGR AARYKKTEIC QTCSKLKNVC QVCILDLEYG LPVQVRDTTL
101: NITSHDSIPR SHVNREYFAE EHERMTRAGL DCDSSFGKMG PNDTLLNLQR SEPHYEKNLP HVCSFNTIGK CTSGAGCAFR HEMPKTGELS HQNIKDRYYG
201: KNDPVAMKLL RKAAEMSTLE PPEDESIKTL YIGGLNSGTI LEHDITWKYQ EGSVAQSGLL PPTMQHLYNM HSAPPNQDNP FYPSMDPQRM GGLSTSENNG
301: ASSYLMPPHQ PYTPPPY

Best Arabidopsis Sequence Match ( AT1G07360.1 )
(BLAST)

001: MAHRILRDHE ADGWERSDFP IICESCLGDN PYVRMTKANY DKECKICTRP FTVFRWRPGR DARYKKTEIC QTCCKLKNVC QVCLLDLEYG LPVQVRDTAL
101: NISTHDSIPK SDVNREYFAE EHDRKARAGL DYESSFGKMR PNDTILKLQR TTPYYKRNRA HVCSFFIRGE CTRGAECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVAMKLL GKAGEMGTLE SPDDESIKTL YVGGLNSRIL EQDIRDQFYA HGEIESIRIL ADKACAFVTY TSREGAEKAA QELSNRLVIN GQRLKLTWGR
301: PKPDQDGANQ QGGVAHSGLL PRAVISQQHN QPPPMQQYYM HPPPANQDKP YYPSMDPQRM GAVISTQEAG GSSTENNGAS SSSYMMPPHQ SYPPPPYGYM
401: PSPYQQQYPP NHHHQPSPMQ HYAPPPAAYP YPQQPGPGSR PAPSPTAVSA ISPDSAPAGS GAPSGSSQQA PDVSTATGSS Q

Arabidopsis Description

Zinc finger CCCH domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.