Factsheet for Zm00001d045183_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

extracellular: 20408568
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07378	Sorghum	cytosol, nucleus, plastid	95.94	96.33
EER89290	Sorghum	cytosol, nucleus, plastid	94.93	95.32
Os07t0281000-01	Rice	cytosol, nucleus, plastid	88.03	89.3
Os06t0170500-01	Rice	nucleus	86.82	88.8
VIT_06s0004g05990.t01	Wine grape	cytosol	37.93	85.39
TraesCS7B01G032400.1	Wheat	nucleus	84.79	84.1
TraesCS7D01G131000.1	Wheat	cytosol	84.58	83.9
TraesCS7A01G131700.1	Wheat	nucleus	84.38	83.7
HORVU7Hr1G027490.1	Barley	cytosol, mitochondrion, nucleus	85.19	78.65
GSMUA_Achr11P...	Banana	cytosol	73.83	77.28
GSMUA_Achr8P23920_001	Banana	cytosol, nucleus, plastid	72.41	75.16
KRH18690	Soybean	nucleus	68.76	72.59
Solyc04g017710.2.1	Tomato	nucleus	70.39	72.44
PGSC0003DMT400021046	Potato	cytosol	69.57	71.61
Solyc10g079190.1.1	Tomato	nucleus	69.37	71.4
KRG89828	Soybean	nucleus	69.57	71.31
KRH14167	Soybean	nucleus	69.17	70.75
KRH73960	Soybean	nucleus	68.97	70.25
CDY15609	Canola	nucleus	62.68	64.51
Bra030679.1-P	Field mustard	nucleus	62.68	64.38
Bra009429.1-P	Field mustard	nucleus	41.38	64.35
AT1G07360.1	Thale cress	nucleus	62.47	64.03
Bra039988.1-P	Field mustard	nucleus	58.42	63.58
AT2G29580.1	Thale cress	nucleus	62.07	63.35
CDX86491	Canola	nucleus	56.8	63.35
CDY51359	Canola	nucleus	58.82	63.32
CDX97876	Canola	nucleus	58.82	62.91
AT5G07060.1	Thale cress	nucleus	45.23	61.43
CDX70201	Canola	nucleus	35.09	61.13
VIT_06s0004g06000.t01	Wine grape	nucleus	33.27	59.21
PGSC0003DMT400075131	Potato	cytosol	11.56	58.76
CDY70348	Canola	nucleus	36.11	58.75
CDY44880	Canola	nucleus	36.11	58.75
CDY53361	Canola	nucleus	29.82	48.04
CDY51311	Canola	nucleus	5.88	38.67
CDX70237	Canola	extracellular	13.59	34.72
AT5G04210.1	Thale cress	cytosol	13.18	33.68
Bra009465.1-P	Field mustard	cytosol	18.26	25.0
CDX72949	Canola	nucleus	6.09	23.08
CDX70241	Canola	cytosol	17.65	21.91
Bra009466.1-P	Field mustard	cytosol	18.26	21.38
CDX70240	Canola	cytosol	6.69	16.18

Protein Annotations

MapMan:15.5.16	MapMan:16.4.5.2.1	Gene3D:3.30.70.330	Gene3D:4.10.1000.10	ProteinID:AQL01758.1	GO:GO:0000398
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0046872	InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677
UniProt:K7VE89	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF16131	PFscan:PS50102	PFscan:PS50103
PANTHER:PTHR14089	PANTHER:PTHR14089:SF6	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00356	SMART:SM00360
SUPFAM:SSF54928	SUPFAM:SSF90229	InterPro:Torus	UniParc:UPI000220D0C0	EnsemblPlantsGene:Zm00001d045183	EnsemblPlants:Zm00001d045183_P001
EnsemblPlants:Zm00001d045183_T001	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:	:

Description

Zinc finger CCCH domain-containing protein 4

Coordinates

chr9:+:15348748..15353756

Molecular Weight (calculated)

55158.1 Da

IEP (calculated)

7.825

GRAVY (calculated)

-0.827

Length

493 amino acids

Sequence
(BLAST)

001: MAHRLLRDAQ ADGWERSDFP IICESCLGDN PYVRMLRAEY DKECKICARP FTVFRWRPGR DARYKKTEIC QTCCKLKNVC QVCLLDLEYG LPVQVRDTAL
101: SINSNDAIPR SDVNREYFAE EHDRRARAGI DYDSSYGKAR PNDTILKLQR TAPYYKRNRA HVCSFFVRGE CTRGAECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVALKLL SKAGEMPSLT PPDDETIRTL YIGGLDSRIT EQDLRDQFYA HGEIESIRMV LQRAIAFVTY TTREGAEKAA EELANKLVIK GVRLKLMWGK
301: PQAPKPEEDE SGRLGQVSHG GLLPRAVISQ QQSGDQPQPP GMEGQQQQAA PASYYFNIPA PPATERTVYP SMDPQRMGAI VKPHDSEGKP GPQQAGQAQA
401: SSNPAQGGGY PAPPPYYHGQ YPPYYPPPPP YGGYMPPPRM PYPPQYPPYQ PMLAQPAQVQ ASSSRQPPHA GGGQQQPPDG PPAQQQPQQP IQN

Best Arabidopsis Sequence Match ( AT2G29580.1 )
(BLAST)

001: MAHRILRDHE ADGWERSDFP IICESCLGDN PYVRMTKANY DKECKICTRP FTVFRWRPGR DARYKKTEVC QTCCKLKNVC QVCLLDLEYG LPVQVRDTAL
101: NISTHDSIPK SDVNREFFAE EHDRKTRAGL DYESSFGKIR PNDTIRMLQR TTPYYKRNRA HICSFFIRGE CTRGDECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVALKLL GKAGEMGTLE SPEDQSIRTL YVGGLNSRVL EQDIRDQFYA HGEIESIRIL AEKACAFVTY TTREGAEKAA EELSNRLVVN GQRLKLTWGR
301: PQVPKPDQDG SNQQGSVAHS GLLPRAVISQ QQNQPPPMLQ YYMHPPPPQP PHQDRPFYPS MDPQRMGAVS SSKESGSSTS DNRGASSSSY TMPPHGHYPQ
401: HQPYPPPSYG GYMQPPYQQY PPYHHGHSQQ ADHDYPQQPG PGSRPNPPHP SSVSAPPPDS VSAAPSGSSQ QSADAAVTTG SSQ

Arabidopsis Description

Zinc finger CCCH domain-containing protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW36]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.