Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15609 | Canola | nucleus | 93.44 | 86.22 |
| Bra030679.1-P | Field mustard | nucleus | 93.21 | 85.83 |
| AT1G07360.1 | Thale cress | nucleus | 87.56 | 80.46 |
| CDY51359 | Canola | nucleus | 71.49 | 69.0 |
| CDX97876 | Canola | nucleus | 71.04 | 68.11 |
| CDX70201 | Canola | nucleus | 40.72 | 63.6 |
| CDY70348 | Canola | nucleus | 42.08 | 61.39 |
| CDY44880 | Canola | nucleus | 42.08 | 61.39 |
| GSMUA_Achr11P... | Banana | cytosol | 63.8 | 59.87 |
| PGSC0003DMT400075131 | Potato | cytosol | 13.12 | 59.79 |
| GSMUA_Achr8P23920_001 | Banana | cytosol, nucleus, plastid | 62.44 | 58.11 |
| Os06t0170500-01 | Rice | nucleus | 63.35 | 58.09 |
| EER89290 | Sorghum | cytosol, nucleus, plastid | 63.57 | 57.23 |
| EES07378 | Sorghum | cytosol, nucleus, plastid | 63.57 | 57.23 |
| TraesCS7D01G131000.1 | Wheat | cytosol | 64.25 | 57.14 |
| TraesCS7B01G032400.1 | Wheat | nucleus | 64.25 | 57.14 |
| TraesCS7A01G131700.1 | Wheat | nucleus | 64.25 | 57.14 |
| Os07t0281000-01 | Rice | cytosol, nucleus, plastid | 62.67 | 57.0 |
| Zm00001d045183_P001 | Maize | extracellular, plasma membrane | 63.35 | 56.8 |
| HORVU7Hr1G027490.1 | Barley | cytosol, mitochondrion, nucleus | 63.8 | 52.81 |
| CDY53361 | Canola | nucleus | 30.77 | 44.44 |
| CDY51311 | Canola | nucleus | 7.01 | 41.33 |
| CDX70237 | Canola | extracellular | 12.22 | 27.98 |
| CDX70241 | Canola | cytosol | 16.29 | 18.14 |
| CDX70240 | Canola | cytosol | 6.79 | 14.71 |
| CDX72949 | Canola | nucleus | 3.17 | 10.77 |
Protein Annotations
| MapMan:15.5.16 | MapMan:16.4.5.2.1 | Gene3D:3.30.70.330 | Gene3D:4.10.1000.10 | GO:A0A078DB40 | EnsemblPlants:CDX86491 |
| ProteinID:CDX86491 | ProteinID:CDX86491.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0046872 |
| EnsemblPlantsGene:GSBRNA2T00145088001 | InterPro:IPR000504 | InterPro:IPR000571 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFAM:PF16131 | PFscan:PS50102 | PFscan:PS50103 | PANTHER:PTHR14089 | PANTHER:PTHR14089:SF6 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00356 | SMART:SM00360 | SUPFAM:SSF54928 | SUPFAM:SSF90229 | InterPro:Torus |
| UniParc:UPI0004EE3DE0 | InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | SEG:seg | : | : |
Description
BnaC08g02120D
Coordinates
chrLK031846:+:114042..116854
Molecular Weight (calculated)
49421.8 Da
IEP (calculated)
6.859
GRAVY (calculated)
-0.815
Length
442 amino acids
Sequence
(BLAST)
(BLAST)
001: MAHRILRDHD ADGWERSDFP IVCESCLGDN PYVRMTKAEY DKECKICTRP FTVFRWRPGR DARYKKTEIC QTCCKLKNVC QVCLLDLEYG LPVQARDTAL
101: NISTHDSIPK SDVNREYFAE EHDRKTRAGL DYESSFGKMR PNDTILKLQR TTPYYKRNRA HVCSFFIRGE CTRGEECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVAMKLL GKAGEMGTLE SPDDQSIKTL YVGGLNSRIL EQDLRDQFYA YGEIESIRIL ADKACAFVTY TAHGSNQQGG VAHSGLLPRA VISQQHNQPP
301: SMQQYYMHPP PPNQDKPYYP SMDPQRMGAV ISTQEAGGSS TTENNGGSSS SYMMPTHQLY PPAPYGYMPS PYQQQYPGPM HHHYAPPPAA YQSYPQQPGP
401: ESRPAPSAVS APPPDSAPAG SGAPSGSYQQ PPAASTTTDS SQ
101: NISTHDSIPK SDVNREYFAE EHDRKTRAGL DYESSFGKMR PNDTILKLQR TTPYYKRNRA HVCSFFIRGE CTRGEECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVAMKLL GKAGEMGTLE SPDDQSIKTL YVGGLNSRIL EQDLRDQFYA YGEIESIRIL ADKACAFVTY TAHGSNQQGG VAHSGLLPRA VISQQHNQPP
301: SMQQYYMHPP PPNQDKPYYP SMDPQRMGAV ISTQEAGGSS TTENNGGSSS SYMMPTHQLY PPAPYGYMPS PYQQQYPGPM HHHYAPPPAA YQSYPQQPGP
401: ESRPAPSAVS APPPDSAPAG SGAPSGSYQQ PPAASTTTDS SQ
001: MAHRILRDHE ADGWERSDFP IICESCLGDN PYVRMTKANY DKECKICTRP FTVFRWRPGR DARYKKTEIC QTCCKLKNVC QVCLLDLEYG LPVQVRDTAL
101: NISTHDSIPK SDVNREYFAE EHDRKARAGL DYESSFGKMR PNDTILKLQR TTPYYKRNRA HVCSFFIRGE CTRGAECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVAMKLL GKAGEMGTLE SPDDESIKTL YVGGLNSRIL EQDIRDQFYA HGEIESIRIL ADKACAFVTY TSREGAEKAA QELSNRLVIN GQRLKLTWGR
301: PKPDQDGANQ QGGVAHSGLL PRAVISQQHN QPPPMQQYYM HPPPANQDKP YYPSMDPQRM GAVISTQEAG GSSTENNGAS SSSYMMPPHQ SYPPPPYGYM
401: PSPYQQQYPP NHHHQPSPMQ HYAPPPAAYP YPQQPGPGSR PAPSPTAVSA ISPDSAPAGS GAPSGSSQQA PDVSTATGSS Q
101: NISTHDSIPK SDVNREYFAE EHDRKARAGL DYESSFGKMR PNDTILKLQR TTPYYKRNRA HVCSFFIRGE CTRGAECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVAMKLL GKAGEMGTLE SPDDESIKTL YVGGLNSRIL EQDIRDQFYA HGEIESIRIL ADKACAFVTY TSREGAEKAA QELSNRLVIN GQRLKLTWGR
301: PKPDQDGANQ QGGVAHSGLL PRAVISQQHN QPPPMQQYYM HPPPANQDKP YYPSMDPQRM GAVISTQEAG GSSTENNGAS SSSYMMPPHQ SYPPPPYGYM
401: PSPYQQQYPP NHHHQPSPMQ HYAPPPAAYP YPQQPGPGSR PAPSPTAVSA ISPDSAPAGS GAPSGSSQQA PDVSTATGSS Q
Arabidopsis Description
Zinc finger CCCH domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNV5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.