CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075131	Potato	cytosol	11.44	36.08
CDX97876	Canola	nucleus	53.92	35.79
CDY51359	Canola	nucleus	53.27	35.59
AT2G29580.1	Thale cress	nucleus	53.59	33.95
CDY15609	Canola	nucleus	51.31	32.78
CDY44880	Canola	nucleus	31.37	31.68
CDY70348	Canola	nucleus	31.37	31.68
GSMUA_Achr11P...	Banana	cytosol	48.37	31.42
GSMUA_Achr8P23920_001	Banana	cytosol, nucleus, plastid	48.04	30.95
CDX86491	Canola	nucleus	44.44	30.77
Os06t0170500-01	Rice	nucleus	48.04	30.5
Os07t0281000-01	Rice	cytosol, nucleus, plastid	47.71	30.04
EER89290	Sorghum	cytosol, nucleus, plastid	48.04	29.94
EES07378	Sorghum	cytosol, nucleus, plastid	48.04	29.94
Zm00001d045183_P001	Maize	extracellular, plasma membrane	48.04	29.82
TraesCS7A01G131700.1	Wheat	nucleus	47.39	29.18
TraesCS7B01G032400.1	Wheat	nucleus	47.39	29.18
TraesCS7D01G131000.1	Wheat	cytosol	47.39	29.18
CDX70201	Canola	nucleus	26.14	28.27
HORVU7Hr1G027490.1	Barley	cytosol, mitochondrion, nucleus	47.71	27.34
CDX70237	Canola	extracellular	8.5	13.47
CDX72949	Canola	nucleus	4.9	11.54
CDY51311	Canola	nucleus	2.61	10.67
CDX70240	Canola	cytosol	6.54	9.8
CDX70241	Canola	cytosol	10.13	7.81

Protein Annotations

MapMan:15.5.16	MapMan:16.4.5.2.1	Gene3D:4.10.1000.10	GO:A0A078IU38	UniProt:A0A078IU38	EnsemblPlants:CDY53361
ProteinID:CDY53361	ProteinID:CDY53361.1	GO:GO:0000398	GO:GO:0003674	GO:GO:0005488	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00010504001	InterPro:IPR000571
PFscan:PS50103	PANTHER:PTHR14089	PANTHER:PTHR14089:SF6	SMART:SM00356	SUPFAM:SSF90229	UniParc:UPI0004EE5F07
InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:	:	:

Description

BnaC04g54410DBnaC04g54410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IU38]

Coordinates

chrLK033193:-:18293..22010

Molecular Weight (calculated)

34608.0 Da

IEP (calculated)

8.546

GRAVY (calculated)

-0.722

Length

306 amino acids

Sequence
(BLAST)

001: MCRWNPQTNS NGISPPPPPL EVLLGPKTTY IKFLEKSKRK QDADGWGRSD FPIICESCLG VNPYVRMTQV DYDKECKLCT RPFSVFRWRP GRDAKQKFVT
101: HVASGRMCVK SLDLEYGLPV QVRDTALNIG NHNSIPKSDV NRELFAEEHD QRTRAGLDYE SSFGKIRPND TIGIIQRTTP HYKRNRAHIC SFYIRGECTK
201: GDECPYRHEM HATGEHCKRS SSVEVTWKGW EISSTPMEIS NPSESWLRKH VPLSHTQTRE GAEKAAEELS NKLLVNSEKL NPPQTPSSAS APTPDSMSGV
301: LLSAIY

Best Arabidopsis Sequence Match ( AT1G07360.1 )
(BLAST)

001: MAHRILRDHE ADGWERSDFP IICESCLGDN PYVRMTKANY DKECKICTRP FTVFRWRPGR DARYKKTEIC QTCCKLKNVC QVCLLDLEYG LPVQVRDTAL
101: NISTHDSIPK SDVNREYFAE EHDRKARAGL DYESSFGKMR PNDTILKLQR TTPYYKRNRA HVCSFFIRGE CTRGAECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVAMKLL GKAGEMGTLE SPDDESIKTL YVGGLNSRIL EQDIRDQFYA HGEIESIRIL ADKACAFVTY TSREGAEKAA QELSNRLVIN GQRLKLTWGR
301: PKPDQDGANQ QGGVAHSGLL PRAVISQQHN QPPPMQQYYM HPPPANQDKP YYPSMDPQRM GAVISTQEAG GSSTENNGAS SSSYMMPPHQ SYPPPPYGYM
401: PSPYQQQYPP NHHHQPSPMQ HYAPPPAAYP YPQQPGPGSR PAPSPTAVSA ISPDSAPAGS GAPSGSSQQA PDVSTATGSS Q

Arabidopsis Description

Zinc finger CCCH domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.