CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70237	Canola	extracellular	20.77	13.99
VIT_06s0004g06000.t01	Wine grape	nucleus	23.85	11.19
CDX97876	Canola	nucleus	22.31	6.29
CDY15609	Canola	nucleus	23.08	6.26
KRH18690	Soybean	nucleus	22.31	6.21
CDY51359	Canola	nucleus	21.54	6.11
EES07378	Sorghum	cytosol, nucleus, plastid	23.08	6.11
EER89290	Sorghum	cytosol, nucleus, plastid	23.08	6.11
Zm00001d045183_P001	Maize	extracellular, plasma membrane	23.08	6.09
Solyc04g017710.2.1	Tomato	nucleus	22.31	6.05
KRG89828	Soybean	nucleus	22.31	6.03
Os06t0170500-01	Rice	nucleus	22.31	6.02
KRH14167	Soybean	nucleus	22.31	6.02
KRH73960	Soybean	nucleus	22.31	5.99
Solyc10g079190.1.1	Tomato	nucleus	21.54	5.85
PGSC0003DMT400021046	Potato	cytosol	21.54	5.85
Os07t0281000-01	Rice	cytosol, nucleus, plastid	21.54	5.76
TraesCS7A01G131700.1	Wheat	nucleus	21.54	5.63
TraesCS7B01G032400.1	Wheat	nucleus	21.54	5.63
TraesCS7D01G131000.1	Wheat	cytosol	21.54	5.63
CDX70241	Canola	cytosol	16.92	5.54
GSMUA_Achr11P...	Banana	cytosol	20.0	5.52
GSMUA_Achr8P23920_001	Banana	cytosol, nucleus, plastid	20.0	5.47
CDY51311	Canola	nucleus	3.08	5.33
HORVU7Hr1G027490.1	Barley	cytosol, mitochondrion, nucleus	21.54	5.24
CDY53361	Canola	nucleus	11.54	4.9
CDX86491	Canola	nucleus	10.77	3.17
CDY44880	Canola	nucleus	6.15	2.64
CDY70348	Canola	nucleus	6.15	2.64
CDX70201	Canola	nucleus	5.38	2.47
VIT_06s0004g05990.t01	Wine grape	cytosol	2.31	1.37
CDX70240	Canola	cytosol	1.54	0.98

Protein Annotations

EnsemblPlants:CDX72949	EnsemblPlantsGene:GSBRNA2T00103375001	Gene3D:3.30.70.330	GO:A0A078C9S5	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	ProteinID:CDX72949	ProteinID:CDX72949.1
SUPFAM:SSF54928	UniParc:UPI0004EEF43D	MapMan:35.2	:	:	:

Description

BnaC06g33970D

Coordinates

chrLK031797:+:1273559..1274033

Molecular Weight (calculated)

14624.3 Da

IEP (calculated)

6.507

GRAVY (calculated)

-0.182

Length

130 amino acids

Sequence
(BLAST)

001: MRILEHGIID KFAAYGVIKS VSFFAWESRA LDTFTTREGA EMAFQALSKF LFIYDQRLKL AWATPLEVGG SSTTENNDAS SNIPIICQYC RATAAAVENE
101: SDTSQMLHRL SMLKHYQSPS WHVNQNTNAL

Best Arabidopsis Sequence Match ( AT5G66120.2 )
(BLAST)

001: MAANTISLSN VAASKNLNSF QSRAFIAPPT IFFPVASAKS KPGELSLSST TLSRSRVRAG ASQLMNEPLN DQRSISSPTV VEVDLGDRSY PIYIGAGLLD
101: HSELLQRHVH GKRVLVVTND RVAPLYLDKT IDALTRGNPN VTVESVILPD GEKYKDMDTL MKVFDKAIES RLDRRCTFVA LGGGVIGDMC GYAAASYLRG
201: VNFIQIPTTV MAQVDSSVGG KTGINHRLGK NLIGAFYQPQ CVLVDTDTLN TLPDREMASG LAEVIKYGLI RDAEFFEWQE KNIEALLARD PAALAFAIKR
301: SCENKADVVS QDEKESGLRA TLNLGHTFGH AIETGFGYGE WLHGEAVAAG TVMAVDMSYR LGWIDESIVK RVNKILVRAK LPTTPPESMT VSMFKSIMAV
401: DKKVADGLLR LILLKGPLGN CVFTGDYDRE ALDATLRAFS KS

Arabidopsis Description

DHQS3-dehydroquinate synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VYV7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.