CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009429.1-P	Field mustard	nucleus	93.64	83.6
CDY70348	Canola	nucleus	75.97	70.96
CDY44880	Canola	nucleus	75.97	70.96
AT5G07060.1	Thale cress	nucleus	62.9	49.04
PGSC0003DMT400075131	Potato	cytosol	14.13	41.24
CDX86491	Canola	nucleus	63.6	40.72
CDY15609	Canola	nucleus	64.31	38.0
GSMUA_Achr11P...	Banana	cytosol	62.54	37.58
CDY51359	Canola	nucleus	60.07	37.12
CDX97876	Canola	nucleus	60.07	36.88
Os06t0170500-01	Rice	nucleus	62.19	36.51
GSMUA_Achr8P23920_001	Banana	cytosol, nucleus, plastid	60.42	36.0
Os07t0281000-01	Rice	cytosol, nucleus, plastid	61.13	35.6
EER89290	Sorghum	cytosol, nucleus, plastid	61.48	35.44
EES07378	Sorghum	cytosol, nucleus, plastid	61.13	35.23
Zm00001d045183_P001	Maize	extracellular, plasma membrane	61.13	35.09
TraesCS7A01G131700.1	Wheat	nucleus	61.48	35.01
TraesCS7B01G032400.1	Wheat	nucleus	61.48	35.01
TraesCS7D01G131000.1	Wheat	cytosol	61.48	35.01
CDY51311	Canola	nucleus	8.83	33.33
HORVU7Hr1G027490.1	Barley	cytosol, mitochondrion, nucleus	61.48	32.58
CDY53361	Canola	nucleus	28.27	26.14
CDX70237	Canola	extracellular	13.07	19.17
CDX70240	Canola	cytosol	9.19	12.75
CDX70241	Canola	cytosol	15.19	10.83
CDX72949	Canola	nucleus	2.47	5.38

Protein Annotations

EnsemblPlants:CDX70201	EnsemblPlantsGene:GSBRNA2T00136324001	GO:A0A078BZS1	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR000571	InterPro:Znf_CCCH	PANTHER:PTHR14089	PANTHER:PTHR14089:SF6	PFscan:PS50103	ProteinID:CDX70201
ProteinID:CDX70201.1	UniParc:UPI0004EE9002	MapMan:15.5.16	:	:	:

Description

BnaA10g25500D

Coordinates

chrLK031790:+:3537778..3538980

Molecular Weight (calculated)

32122.0 Da

IEP (calculated)

7.411

GRAVY (calculated)

-0.743

Length

283 amino acids

Sequence
(BLAST)

001: MAQRILRDHE DNGCERSDFP ILCQSCLGDN PYLRMALANF DKECKVCTRP FTVFRWRPGR SSRYKKTEIC QTCSKLKNVC QVCILDLEHG LPVQVRDTTL
101: NITSDDSNDT LLNFQRSEPN YENNQPHVCS FNTIGKCTRG AGCAFRHEMP KTGELSHQNI KDRYYGKNDP VAMKLLRKAA EMSTLEPPED ESTKTLYIGR
201: LNSGTILEHA ITWKYQEGSV AQSGLLPPTM QHLYNMHSAP PNQDNPFYPS MDPQRMGGLS TSENNGASSY LMSPHQPYTQ PPY

Best Arabidopsis Sequence Match ( AT1G07360.1 )
(BLAST)

001: MAHRILRDHE ADGWERSDFP IICESCLGDN PYVRMTKANY DKECKICTRP FTVFRWRPGR DARYKKTEIC QTCCKLKNVC QVCLLDLEYG LPVQVRDTAL
101: NISTHDSIPK SDVNREYFAE EHDRKARAGL DYESSFGKMR PNDTILKLQR TTPYYKRNRA HVCSFFIRGE CTRGAECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVAMKLL GKAGEMGTLE SPDDESIKTL YVGGLNSRIL EQDIRDQFYA HGEIESIRIL ADKACAFVTY TSREGAEKAA QELSNRLVIN GQRLKLTWGR
301: PKPDQDGANQ QGGVAHSGLL PRAVISQQHN QPPPMQQYYM HPPPANQDKP YYPSMDPQRM GAVISTQEAG GSSTENNGAS SSSYMMPPHQ SYPPPPYGYM
401: PSPYQQQYPP NHHHQPSPMQ HYAPPPAAYP YPQQPGPGSR PAPSPTAVSA ISPDSAPAGS GAPSGSSQQA PDVSTATGSS Q

Arabidopsis Description

Zinc finger CCCH domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.