CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07378	Sorghum	cytosol, nucleus, plastid	97.35	97.35
Zm00001d045183_P001	Maize	extracellular, plasma membrane	95.32	94.93
Os07t0281000-01	Rice	cytosol, nucleus, plastid	89.0	89.92
Os06t0170500-01	Rice	nucleus	87.58	89.21
VIT_06s0004g05990.t01	Wine grape	cytosol	37.88	84.93
TraesCS7B01G032400.1	Wheat	nucleus	85.54	84.51
TraesCS7D01G131000.1	Wheat	cytosol	85.34	84.31
TraesCS7A01G131700.1	Wheat	nucleus	85.13	84.1
HORVU7Hr1G027490.1	Barley	cytosol, mitochondrion, nucleus	85.95	79.03
GSMUA_Achr11P...	Banana	cytosol	74.75	77.92
GSMUA_Achr8P23920_001	Banana	cytosol, nucleus, plastid	73.52	76.0
Solyc04g017710.2.1	Tomato	nucleus	71.49	73.28
KRH18690	Soybean	nucleus	69.45	73.02
PGSC0003DMT400021046	Potato	cytosol	70.88	72.65
Solyc10g079190.1.1	Tomato	nucleus	70.26	72.03
KRH14167	Soybean	nucleus	70.26	71.58
KRG89828	Soybean	nucleus	70.06	71.52
KRH73960	Soybean	nucleus	69.86	70.87
CDY15609	Canola	nucleus	63.34	64.93
AT1G07360.1	Thale cress	nucleus	63.54	64.86
Bra009429.1-P	Field mustard	nucleus	41.75	64.67
Bra030679.1-P	Field mustard	nucleus	63.14	64.58
Bra039988.1-P	Field mustard	nucleus	58.86	63.8
CDX86491	Canola	nucleus	57.23	63.57
AT2G29580.1	Thale cress	nucleus	62.32	63.35
CDY51359	Canola	nucleus	59.06	63.32
CDX97876	Canola	nucleus	59.06	62.91
CDX70201	Canola	nucleus	35.44	61.48
AT5G07060.1	Thale cress	nucleus	45.42	61.43
VIT_06s0004g06000.t01	Wine grape	nucleus	33.81	59.93
PGSC0003DMT400075131	Potato	cytosol	11.61	58.76
CDY70348	Canola	nucleus	36.25	58.75
CDY44880	Canola	nucleus	36.25	58.75
CDY53361	Canola	nucleus	29.94	48.04
CDY51311	Canola	nucleus	5.91	38.67
CDX70237	Canola	extracellular	13.65	34.72
AT5G04210.1	Thale cress	cytosol	13.24	33.68
Bra009465.1-P	Field mustard	cytosol	18.33	25.0
CDX72949	Canola	nucleus	6.11	23.08
CDX70241	Canola	cytosol	18.13	22.42
Bra009466.1-P	Field mustard	cytosol	18.74	21.85
CDX70240	Canola	cytosol	6.72	16.18

Protein Annotations

MapMan:15.5.16	MapMan:16.4.5.2.1	Gene3D:3.30.70.330	Gene3D:4.10.1000.10	EntrezGene:8072573	UniProt:C5Z502
EnsemblPlants:EER89290	ProteinID:EER89290	ProteinID:EER89290.1	GO:GO:0000387	GO:GO:0000398	GO:GO:0000974
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0017070	GO:GO:0036002	GO:GO:0046872	GO:GO:0071006	GO:GO:0071007
InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF16131
PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR14089	PANTHER:PTHR14089:SF6	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00356	SMART:SM00360	EnsemblPlantsGene:SORBI_3010G055500	SUPFAM:SSF54928	SUPFAM:SSF90229	unigene:Sbi.1193
InterPro:Torus	UniParc:UPI0001A8968B	RefSeq:XP_002437923.1	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr10:-:4324391..4328083

Molecular Weight (calculated)

54968.8 Da

IEP (calculated)

7.630

GRAVY (calculated)

-0.819

Length

491 amino acids

Sequence
(BLAST)

001: MAHRLLRDAQ ADGWERSDFP IICESCLGDN PYVRMLRAEY DKECKICARP FTVFRWRPGR DARYKKTEIC QTCCKLKNVC QVCLLDLEYG LPVQVRDTAL
101: AINSNDAIPR SDVNREYFAE EHDRRARAGI DYDSSYGKAR PNDTILKLQR TAPYYKRNRA HVCSFFVRGE CTRGAECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVALKLL SKAGEMPSLT PPDDETIRTL YIGGLDSRIT EQDLRDQFYA HGEIESIRMV LQRAIAFVTY TTREGAEKAA EELANKLVIK GVRLKLMWGK
301: PQAPKPEEDE SGRQGQVSHG GLLPRAVISQ QQSSDQPQPP GMEDQQQQAA PASYYFNIPA PAATERTLYP SMDPQRMGAI VKSQDSEGKP GLQQAGQGQP
401: SSSSAQGGYP APPPYYHGQY PPYYPPPPPY GGYMPPPRMP YPPQYPPYQP MLAPPAQAQA SSSQQPPQAG AGQQPPHGPP AQQQPQPQIH N

Best Arabidopsis Sequence Match ( AT1G07360.1 )
(BLAST)

001: MAHRILRDHE ADGWERSDFP IICESCLGDN PYVRMTKANY DKECKICTRP FTVFRWRPGR DARYKKTEIC QTCCKLKNVC QVCLLDLEYG LPVQVRDTAL
101: NISTHDSIPK SDVNREYFAE EHDRKARAGL DYESSFGKMR PNDTILKLQR TTPYYKRNRA HVCSFFIRGE CTRGAECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVAMKLL GKAGEMGTLE SPDDESIKTL YVGGLNSRIL EQDIRDQFYA HGEIESIRIL ADKACAFVTY TSREGAEKAA QELSNRLVIN GQRLKLTWGR
301: PKPDQDGANQ QGGVAHSGLL PRAVISQQHN QPPPMQQYYM HPPPANQDKP YYPSMDPQRM GAVISTQEAG GSSTENNGAS SSSYMMPPHQ SYPPPPYGYM
401: PSPYQQQYPP NHHHQPSPMQ HYAPPPAAYP YPQQPGPGSR PAPSPTAVSA ISPDSAPAGS GAPSGSSQQA PDVSTATGSS Q

Arabidopsis Description

Zinc finger CCCH domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.