Factsheet for VIT_06s0004g05990.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	87.21	40.55
GSMUA_Achr8P23920_001	Banana	cytosol, nucleus, plastid	87.21	40.21
Os06t0170500-01	Rice	nucleus	85.39	38.8
Os07t0281000-01	Rice	cytosol, nucleus, plastid	85.39	38.48
Zm00001d045183_P001	Maize	extracellular, plasma membrane	85.39	37.93
EER89290	Sorghum	cytosol, nucleus, plastid	84.93	37.88
EES07378	Sorghum	cytosol, nucleus, plastid	84.93	37.88
TraesCS7A01G131700.1	Wheat	nucleus	84.93	37.42
TraesCS7B01G032400.1	Wheat	nucleus	84.93	37.42
TraesCS7D01G131000.1	Wheat	cytosol	84.93	37.42
HORVU7Hr1G027490.1	Barley	cytosol, mitochondrion, nucleus	84.93	34.83
CDY51311	Canola	nucleus	4.11	12.0
Bra009465.1-P	Field mustard	cytosol	19.63	11.94
CDX70240	Canola	cytosol	10.5	11.27
CDX70237	Canola	extracellular	9.13	10.36
AT5G04210.1	Thale cress	cytosol	7.76	8.81
CDX70241	Canola	cytosol	10.96	6.05
Bra009466.1-P	Field mustard	cytosol	10.96	5.7
CDX72949	Canola	nucleus	1.37	2.31
VIT_06s0004g06000.t01	Wine grape	nucleus	2.74	2.17

Protein Annotations

MapMan:15.5.16	MapMan:16.4.5.2.1	Gene3D:4.10.1000.10	ProteinID:CCB43508	ProteinID:CCB43508.1	UniProt:F6GUV0
EMBL:FN594951	GO:GO:0000398	GO:GO:0003674	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0046872	InterPro:IPR000571	PFAM:PF16131	PFscan:PS50103
PANTHER:PTHR14089	PANTHER:PTHR14089:SF6	SMART:SM00356	SUPFAM:SSF90229	TIGR:TC59603	InterPro:Torus
UniParc:UPI0002108F51	ArrayExpress:VIT_06s0004g05990	EnsemblPlantsGene:VIT_06s0004g05990	EnsemblPlants:VIT_06s0004g05990.t01	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf

Description

No Description!

Coordinates

chr6:+:6800041..6802515

Molecular Weight (calculated)

25663.5 Da

IEP (calculated)

8.472

GRAVY (calculated)

-0.737

Length

219 amino acids

Sequence
(BLAST)

001: MAHRLLRDLE ADGWERSDFP IICESCLGDN PYVRMTKADY DKECKICTRP FTVFRWRPGR DARFKKTEVC QTCSKLKNVC QVCLLDLEYG LPVQVRDTAL
101: SINSNDAIPK SDVNREYFAE EHDRRARAGI DYESSFGKVR PNDTILKLQR TTPYYKRNRA HVCSFYVRGE CTRGAECPYR HEMPITGELS QQNIKDRYYG
201: WDTLCVKWTC AQLKQKSSW

Best Arabidopsis Sequence Match ( AT1G07360.1 )
(BLAST)

001: MAHRILRDHE ADGWERSDFP IICESCLGDN PYVRMTKANY DKECKICTRP FTVFRWRPGR DARYKKTEIC QTCCKLKNVC QVCLLDLEYG LPVQVRDTAL
101: NISTHDSIPK SDVNREYFAE EHDRKARAGL DYESSFGKMR PNDTILKLQR TTPYYKRNRA HVCSFFIRGE CTRGAECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVAMKLL GKAGEMGTLE SPDDESIKTL YVGGLNSRIL EQDIRDQFYA HGEIESIRIL ADKACAFVTY TSREGAEKAA QELSNRLVIN GQRLKLTWGR
301: PKPDQDGANQ QGGVAHSGLL PRAVISQQHN QPPPMQQYYM HPPPANQDKP YYPSMDPQRM GAVISTQEAG GSSTENNGAS SSSYMMPPHQ SYPPPPYGYM
401: PSPYQQQYPP NHHHQPSPMQ HYAPPPAAYP YPQQPGPGSR PAPSPTAVSA ISPDSAPAGS GAPSGSSQQA PDVSTATGSS Q

Arabidopsis Description

Zinc finger CCCH domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.