Factsheet for VIT_06s0004g06000.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89828	Soybean	nucleus	71.12	40.96
PGSC0003DMT400021046	Potato	cytosol	70.76	40.92
Solyc10g079190.1.1	Tomato	nucleus	69.68	40.29
Solyc04g017710.2.1	Tomato	nucleus	69.68	40.29
KRH14167	Soybean	nucleus	69.31	39.83
KRH18690	Soybean	nucleus	66.06	39.19
KRH73960	Soybean	nucleus	68.23	39.05
GSMUA_Achr11P...	Banana	cytosol	62.82	36.94
GSMUA_Achr8P23920_001	Banana	cytosol, nucleus, plastid	63.18	36.84
Os06t0170500-01	Rice	nucleus	63.54	36.51
Os07t0281000-01	Rice	cytosol, nucleus, plastid	63.9	36.42
EES07378	Sorghum	cytosol, nucleus, plastid	60.29	34.01
EER89290	Sorghum	cytosol, nucleus, plastid	59.93	33.81
Zm00001d045183_P001	Maize	extracellular, plasma membrane	59.21	33.27
TraesCS7B01G032400.1	Wheat	nucleus	59.57	33.2
TraesCS7D01G131000.1	Wheat	cytosol	59.21	33.0
TraesCS7A01G131700.1	Wheat	nucleus	58.84	32.8
HORVU7Hr1G027490.1	Barley	cytosol, mitochondrion, nucleus	59.21	30.71
CDY51311	Canola	nucleus	7.94	29.33
AT5G04210.1	Thale cress	cytosol	20.22	29.02
CDX70237	Canola	extracellular	18.77	26.94
CDX72949	Canola	nucleus	11.19	23.85
CDX70241	Canola	cytosol	22.74	15.87
Bra009466.1-P	Field mustard	cytosol	23.47	15.44
Bra009465.1-P	Field mustard	cytosol	18.77	14.44
CDX70240	Canola	cytosol	4.33	5.88
VIT_06s0004g05990.t01	Wine grape	cytosol	2.17	2.74

Protein Annotations

EntrezGene:100241603	wikigene:100241603	Gene3D:3.30.70.330	MapMan:35.1	ProteinID:CCB43507	ProteinID:CCB43507.1
UniProt:F6GUU9	EMBL:FN594951	GO:GO:0000387	GO:GO:0000398	GO:GO:0000974	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0017070	GO:GO:0036002	GO:GO:0071006	GO:GO:0071007	InterPro:IPR000504	InterPro:IPR012677
EntrezGene:LOC100241603	wikigene:LOC100241603	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR14089
PANTHER:PTHR14089:SF6	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	TIGR:TC65471
UniParc:UPI0002108F50	ArrayExpress:VIT_06s0004g06000	EnsemblPlantsGene:VIT_06s0004g06000	EnsemblPlants:VIT_06s0004g06000.t01	unigene:Vvi.1512	RefSeq:XP_002280897
RefSeq:XP_002280897.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:6805481..6806877

Molecular Weight (calculated)

30452.9 Da

IEP (calculated)

5.891

GRAVY (calculated)

-0.871

Length

277 amino acids

Sequence
(BLAST)

001: MEGVNDPVAL KLLNKAGEMP SLEPPEDESI KTLYVGGLDA RVTEQDLRDH FYAHGEIESV RMVLQRACAF VTYTTREGAE KAAEELSNKL VIKGLRLKLM
101: WGRPQAPKPE GESSEEARQQ AALAHGGMLP RAVISQQQNQ VIQPPGTQDQ PPPPMHYFNI PPPPQQERTF YPSMDPQRMG ALVPSQEGAP SGSAGPSENK
201: AGSDKQQQGQ HYAYPAMPPP QGQFHQQFYP PYGYMPPPPP YQQYPPPYPS AMPPPPPPPP QASQQFQHSA PPGPSQQ

Best Arabidopsis Sequence Match ( AT2G29580.1 )
(BLAST)

001: MAHRILRDHE ADGWERSDFP IICESCLGDN PYVRMTKANY DKECKICTRP FTVFRWRPGR DARYKKTEVC QTCCKLKNVC QVCLLDLEYG LPVQVRDTAL
101: NISTHDSIPK SDVNREFFAE EHDRKTRAGL DYESSFGKIR PNDTIRMLQR TTPYYKRNRA HICSFFIRGE CTRGDECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVALKLL GKAGEMGTLE SPEDQSIRTL YVGGLNSRVL EQDIRDQFYA HGEIESIRIL AEKACAFVTY TTREGAEKAA EELSNRLVVN GQRLKLTWGR
301: PQVPKPDQDG SNQQGSVAHS GLLPRAVISQ QQNQPPPMLQ YYMHPPPPQP PHQDRPFYPS MDPQRMGAVS SSKESGSSTS DNRGASSSSY TMPPHGHYPQ
401: HQPYPPPSYG GYMQPPYQQY PPYHHGHSQQ ADHDYPQQPG PGSRPNPPHP SSVSAPPPDS VSAAPSGSSQ QSADAAVTTG SSQ

Arabidopsis Description

Zinc finger CCCH domain-containing protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW36]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.