CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51311	Canola	nucleus	36.79	94.67
AT5G04210.1	Thale cress	cytosol	37.82	37.82
CDX70241	Canola	cytosol	49.74	24.18
CDX72949	Canola	nucleus	13.99	20.77
VIT_06s0004g06000.t01	Wine grape	nucleus	26.94	18.77
CDX97876	Canola	nucleus	36.79	15.4
CDY51359	Canola	nucleus	36.27	15.28
CDY15609	Canola	nucleus	37.31	15.03
KRH18690	Soybean	nucleus	34.72	14.35
KRH73960	Soybean	nucleus	35.23	14.05
PGSC0003DMT400021046	Potato	cytosol	34.72	13.99
KRG89828	Soybean	nucleus	34.72	13.93
KRH14167	Soybean	nucleus	34.72	13.9
GSMUA_Achr11P...	Banana	cytosol	33.68	13.8
Solyc10g079190.1.1	Tomato	nucleus	34.2	13.78
Os06t0170500-01	Rice	nucleus	34.2	13.69
EER89290	Sorghum	cytosol, nucleus, plastid	34.72	13.65
Zm00001d045183_P001	Maize	extracellular, plasma membrane	34.72	13.59
Os07t0281000-01	Rice	cytosol, nucleus, plastid	34.2	13.58
EES07378	Sorghum	cytosol, nucleus, plastid	34.2	13.44
GSMUA_Achr8P23920_001	Banana	cytosol, nucleus, plastid	32.64	13.26
TraesCS7A01G131700.1	Wheat	nucleus	33.68	13.08
TraesCS7B01G032400.1	Wheat	nucleus	33.68	13.08
TraesCS7D01G131000.1	Wheat	cytosol	33.68	13.08
CDX70201	Canola	nucleus	19.17	13.07
Solyc04g017710.2.1	Tomato	nucleus	31.61	12.73
CDX86491	Canola	nucleus	27.98	12.22
HORVU7Hr1G027490.1	Barley	cytosol, mitochondrion, nucleus	33.68	12.17
VIT_06s0004g05990.t01	Wine grape	cytosol	10.36	9.13
CDY70348	Canola	nucleus	13.99	8.91
CDY44880	Canola	nucleus	13.99	8.91
CDY53361	Canola	nucleus	13.47	8.5
CDX70240	Canola	cytosol	5.7	5.39

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	GO:A0A078C0F5	EnsemblPlants:CDX70237	ProteinID:CDX70237	ProteinID:CDX70237.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00136368001	InterPro:IPR000504
InterPro:IPR000571	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PFscan:PS50103
PANTHER:PTHR14089	PANTHER:PTHR14089:SF6	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0004EE9619	InterPro:Znf_CCCH	:	:

Description

BnaA10g25860D

Coordinates

chrLK031790:-:3705704..3706550

Molecular Weight (calculated)

21992.6 Da

IEP (calculated)

8.806

GRAVY (calculated)

-0.197

Length

193 amino acids

Sequence
(BLAST)

001: MNFRGYHLFS LLMFSVLIVY SQLGRFDGHP LVCGFFKSGR TCMAGATCPF AHKVPRVFDS RTGLDNPKTV ELLARNVYMG PVDPPLDQTL KTLYLRRLNS
101: SVHEQHIRDR FNPYGEIKSI VYFAMRGVDG AFLTYTTREG AEKAMLEHSS WVVINGQNVK LLWGAHVIPK EAVVQENDQP QDHDRDVSRI LIH

Best Arabidopsis Sequence Match ( AT5G04210.1 )
(BLAST)

001: MAQIEDKSRK LDCIPICPLF DAGRQCTRGT MCLYRHEINR GLDCHGRSGL ENPFVLEVLA RACNTGPLKP PEDQSIKTLY IRRLINSSVL EQDIRDHFCP
101: YGEIESIVIF PHRGGGTCAF LTYTTRLAAE KAMLELSSWT DIKGQRVKLL WGPTEKWQHK MTGAAISSTQ EVGSSSSNTA DLVTKLVHSL EKL

Arabidopsis Description

CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9FYE0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.