Factsheet for Os06t0170500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

nucleus: 19621931

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0281000-01	Rice	cytosol, nucleus, plastid	93.15	92.39
EES07378	Sorghum	cytosol, nucleus, plastid	90.66	89.0
EER89290	Sorghum	cytosol, nucleus, plastid	89.21	87.58
Zm00001d045183_P001	Maize	extracellular, plasma membrane	88.8	86.82
VIT_06s0004g05990.t01	Wine grape	cytosol	38.8	85.39
TraesCS7D01G131000.1	Wheat	cytosol	87.97	85.31
TraesCS7B01G032400.1	Wheat	nucleus	87.97	85.31
TraesCS7A01G131700.1	Wheat	nucleus	87.55	84.91
HORVU7Hr1G027490.1	Barley	cytosol, mitochondrion, nucleus	87.97	79.4
GSMUA_Achr11P...	Banana	cytosol	77.39	79.19
GSMUA_Achr8P23920_001	Banana	cytosol, nucleus, plastid	75.31	76.42
KRH18690	Soybean	nucleus	72.2	74.52
KRH14167	Soybean	nucleus	72.61	72.61
KRG89828	Soybean	nucleus	72.41	72.56
Solyc04g017710.2.1	Tomato	nucleus	71.78	72.23
PGSC0003DMT400021046	Potato	cytosol	71.37	71.82
Solyc10g079190.1.1	Tomato	nucleus	71.37	71.82
KRH73960	Soybean	nucleus	71.58	71.28
Bra009429.1-P	Field mustard	nucleus	42.95	65.3
CDY15609	Canola	nucleus	64.32	64.72
AT1G07360.1	Thale cress	nucleus	64.52	64.66
Bra030679.1-P	Field mustard	nucleus	64.11	64.38
CDY51359	Canola	nucleus	61.0	64.19
Bra039988.1-P	Field mustard	nucleus	60.17	64.02
AT2G29580.1	Thale cress	nucleus	64.11	63.98
VIT_06s0004g06000.t01	Wine grape	nucleus	36.51	63.54
CDX86491	Canola	nucleus	58.09	63.35
CDX97876	Canola	nucleus	60.58	63.34
AT5G07060.1	Thale cress	nucleus	47.3	62.81
CDX70201	Canola	nucleus	36.51	62.19
CDY70348	Canola	nucleus	37.34	59.41
CDY44880	Canola	nucleus	37.34	59.41
PGSC0003DMT400075131	Potato	cytosol	11.83	58.76
CDY53361	Canola	nucleus	30.5	48.04
CDY51311	Canola	nucleus	5.81	37.33
CDX70237	Canola	extracellular	13.69	34.2
AT5G04210.1	Thale cress	cytosol	13.49	33.68
Bra009465.1-P	Field mustard	cytosol	18.46	24.72
CDX70241	Canola	cytosol	18.46	22.42
CDX72949	Canola	nucleus	6.02	22.31
Bra009466.1-P	Field mustard	cytosol	19.09	21.85
CDX70240	Canola	cytosol	6.85	16.18

Protein Annotations

MapMan:15.5.16	MapMan:16.4.5.2.1	Gene3D:3.30.70.330	Gene3D:4.10.1000.10	EntrezGene:4340263	EMBL:AK120360
ProteinID:BAD72175.1	ProteinID:BAF18845.1	ProteinID:BAS96372.1	ProteinID:EAZ35976.1	GO:GO:0000387	GO:GO:0000398
GO:GO:0000974	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0017070	GO:GO:0036002	GO:GO:0046872
GO:GO:0071006	GO:GO:0071007	InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
EnsemblPlantsGene:Os06g0170500	EnsemblPlants:Os06t0170500-01	PFAM:PF00076	PFAM:PF16131	PFscan:PS50102	PFscan:PS50103
PANTHER:PTHR14089	PANTHER:PTHR14089:SF6	UniProt:Q5SNN4	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00356
SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF90229	InterPro:Torus	UniParc:UPI00000A4465	RefSeq:XP_015643850.1
InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:	:	:

Description

ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40Similar to RNA-binding protein-like. (Os06t0170500-01);Similar to cDNA clone:J013067M02, full insert sequence. (Os06t0170500-02)

Coordinates

chr6:-:3536683..3540219

Molecular Weight (calculated)

54012.8 Da

IEP (calculated)

7.961

GRAVY (calculated)

-0.809

Length

482 amino acids

Sequence
(BLAST)

001: MAHRLLRDAQ ADGWERSDFP IICESCLGDN PYVRMLRAEY DKECKICARP FTVFRWRPGR DARYKKTEIC QTCCKLKNVC QVCLLDLEYG LPVQVRDTAL
101: AINSNDAIPR SDVNREYFAE EHDRKARAGI DYDSSHGKAR PNDTILKLQR TAPYYKRNRA HVCSFYVRGE CTRGAECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVALKLL GKAGEMPSLT PPDDESIRTL YIGGLNNRIT EQDLRDQFYA HGEIESIRMV LQRACAFVTY TTREGAEKAA EELANKLVIK GIRLKLMWGK
301: PQAPKPEDDE AGRQGHVAHG GMLPRAVISQ QQSGDQPQPP GMEGQQQAPS GSYYFNIPAP PGAERTLYPS MDPQRMGALV KSQEGDGKPG PQQAAQAQAS
401: SSSGQSYPMP PQYYHGQYPP YYPPYGGYMP PPRMPYPPPP QYPPYQPMLA TPAQSQASSS QQPAPATLHQ AQVPPPQQTT QN

Best Arabidopsis Sequence Match ( AT1G07360.1 )
(BLAST)

001: MAHRILRDHE ADGWERSDFP IICESCLGDN PYVRMTKANY DKECKICTRP FTVFRWRPGR DARYKKTEIC QTCCKLKNVC QVCLLDLEYG LPVQVRDTAL
101: NISTHDSIPK SDVNREYFAE EHDRKARAGL DYESSFGKMR PNDTILKLQR TTPYYKRNRA HVCSFFIRGE CTRGAECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVAMKLL GKAGEMGTLE SPDDESIKTL YVGGLNSRIL EQDIRDQFYA HGEIESIRIL ADKACAFVTY TSREGAEKAA QELSNRLVIN GQRLKLTWGR
301: PKPDQDGANQ QGGVAHSGLL PRAVISQQHN QPPPMQQYYM HPPPANQDKP YYPSMDPQRM GAVISTQEAG GSSTENNGAS SSSYMMPPHQ SYPPPPYGYM
401: PSPYQQQYPP NHHHQPSPMQ HYAPPPAAYP YPQQPGPGSR PAPSPTAVSA ISPDSAPAGS GAPSGSSQQA PDVSTATGSS Q

Arabidopsis Description

Zinc finger CCCH domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.