Factsheet for AT5G07060.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009429.1-P	Field mustard	nucleus	58.4	66.88
CDX70201	Canola	nucleus	49.04	62.9
CDY44880	Canola	nucleus	49.59	59.41
CDY70348	Canola	nucleus	49.59	59.41
AT1G07360.1	Thale cress	nucleus	69.15	52.18
AT2G29580.1	Thale cress	nucleus	66.39	49.9
GSMUA_Achr11P...	Banana	cytosol	62.81	48.41
GSMUA_Achr8P23920_001	Banana	cytosol, nucleus, plastid	62.26	47.58
Os06t0170500-01	Rice	nucleus	62.81	47.3
Os07t0281000-01	Rice	cytosol, nucleus, plastid	61.16	45.68
EER89290	Sorghum	cytosol, nucleus, plastid	61.43	45.42
Zm00001d045183_P001	Maize	extracellular, plasma membrane	61.43	45.23
EES07378	Sorghum	cytosol, nucleus, plastid	61.16	45.21
TraesCS7A01G131700.1	Wheat	nucleus	61.71	45.07
TraesCS7B01G032400.1	Wheat	nucleus	61.71	45.07
TraesCS7D01G131000.1	Wheat	cytosol	61.71	45.07
HORVU7Hr1G027490.1	Barley	cytosol, mitochondrion, nucleus	61.98	42.13
PGSC0003DMT400075131	Potato	cytosol	11.02	41.24
AT5G04210.1	Thale cress	cytosol	12.12	22.8

Protein Annotations

MapMan:15.5.16	MapMan:16.4.5.2.1	Gene3D:3.30.70.330	Gene3D:4.10.1000.10	EntrezGene:830597	ProteinID:AED91103.1
ArrayExpress:AT5G07060	EnsemblPlantsGene:AT5G07060	RefSeq:AT5G07060	TAIR:AT5G07060	RefSeq:AT5G07060-TAIR-G	EnsemblPlants:AT5G07060.1
TAIR:AT5G07060.1	Unigene:At.54760	ProteinID:BAB11164.1	EMBL:DQ446923	EMBL:DQ653266	GO:GO:0000387
GO:GO:0000398	GO:GO:0000974	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0017070	GO:GO:0036002
GO:GO:0046872	GO:GO:0071006	GO:GO:0071007	InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677
RefSeq:NP_196323.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PO:PO:0000293	PO:PO:0007611	PO:PO:0009031
PO:PO:0009046	PO:PO:0009047	PFscan:PS50103	PANTHER:PTHR14089	PANTHER:PTHR14089:SF6	UniProt:Q9FL40
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00356	SUPFAM:SSF54928	SUPFAM:SSF90229	UniParc:UPI00000A6C59
InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:	:	:

Description

Zinc finger CCCH domain-containing protein 53 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL40]

Coordinates

chr5:-:2194219..2195883

Molecular Weight (calculated)

41756.8 Da

IEP (calculated)

6.565

GRAVY (calculated)

-0.888

Length

363 amino acids

Sequence
(BLAST)

001: MSHRDHGADG WESADFPITC ESCFGDNPYM RMTRADYDKE CKICSRPFTA FRWRPGRNAR FKKTEICQTC SKLKNVCQVC LLDLGFGLPV QVRDSALNIN
101: SHYSVPMSHV NREYFADEHD PKTRAGLDYE SSFGKMQPND TILKLQRRTP SYEKNRPKIC SFYTIGQCKR GAECSFRHEM PETGELSHQN IRDRYYSVND
201: PVAMKLLRKA GEMGTLEPPE DESIKTLYVG GLNSRIFEQD IHDHFYAYGE MESIRVMAED GKYDQSGSNQ QQQGSIAHTG LISQQQNQHS QMQQYYMQPP
301: PPNEYSHYPS MDTQRMGAAF STQESDGSST SENNRAYSSY SYPMPPHQPY PTPPPYIDIY IYI

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.