Factsheet for AT1G07360.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15609	Canola	nucleus	90.44	90.81
Bra030679.1-P	Field mustard	nucleus	90.23	90.42
CDX86491	Canola	nucleus	80.46	87.56
AT2G29580.1	Thale cress	nucleus	79.21	78.88
AT5G07060.1	Thale cress	nucleus	52.18	69.15
GSMUA_Achr11P...	Banana	cytosol	65.28	66.67
GSMUA_Achr8P23920_001	Banana	cytosol, nucleus, plastid	64.03	64.84
Os06t0170500-01	Rice	nucleus	64.66	64.52
EER89290	Sorghum	cytosol, nucleus, plastid	64.86	63.54
TraesCS7D01G131000.1	Wheat	cytosol	65.28	63.18
TraesCS7B01G032400.1	Wheat	nucleus	65.28	63.18
EES07378	Sorghum	cytosol, nucleus, plastid	64.45	63.14
TraesCS7A01G131700.1	Wheat	nucleus	65.07	62.98
PGSC0003DMT400075131	Potato	cytosol	12.68	62.89
Os07t0281000-01	Rice	cytosol, nucleus, plastid	63.41	62.76
Zm00001d045183_P001	Maize	extracellular, plasma membrane	64.03	62.47
HORVU7Hr1G027490.1	Barley	cytosol, mitochondrion, nucleus	65.28	58.8
AT5G04210.1	Thale cress	cytosol	14.14	35.23

Protein Annotations

MapMan:15.5.16	MapMan:16.4.5.2.1	Gene3D:3.30.70.330	Gene3D:4.10.1000.10	EntrezGene:837248	ProteinID:AAF79557.1
ProteinID:AEE28114.1	ArrayExpress:AT1G07360	EnsemblPlantsGene:AT1G07360	RefSeq:AT1G07360	TAIR:AT1G07360	RefSeq:AT1G07360-TAIR-G
EnsemblPlants:AT1G07360.1	TAIR:AT1G07360.1	EMBL:AY054519	EMBL:AY114632	Unigene:At.25418	GO:GO:0000387
GO:GO:0000398	GO:GO:0000974	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605
GO:GO:0009607	GO:GO:0009987	GO:GO:0016043	GO:GO:0017070	GO:GO:0036002	GO:GO:0042742
GO:GO:0046872	GO:GO:0071006	GO:GO:0071007	InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677
RefSeq:NP_563788.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF16131	PO:PO:0000013	PO:PO:0000037
PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098
PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019
PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195
PO:PO:0025281	PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR14089	PANTHER:PTHR14089:SF6	UniProt:Q9LNV5
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00356	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF90229
InterPro:Torus	UniParc:UPI00000AB59C	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:

Description

Zinc finger CCCH domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNV5]

Coordinates

chr1:-:2260317..2262923

Molecular Weight (calculated)

53590.8 Da

IEP (calculated)

7.508

GRAVY (calculated)

-0.819

Length

481 amino acids

Sequence
(BLAST)

001: MAHRILRDHE ADGWERSDFP IICESCLGDN PYVRMTKANY DKECKICTRP FTVFRWRPGR DARYKKTEIC QTCCKLKNVC QVCLLDLEYG LPVQVRDTAL
101: NISTHDSIPK SDVNREYFAE EHDRKARAGL DYESSFGKMR PNDTILKLQR TTPYYKRNRA HVCSFFIRGE CTRGAECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVAMKLL GKAGEMGTLE SPDDESIKTL YVGGLNSRIL EQDIRDQFYA HGEIESIRIL ADKACAFVTY TSREGAEKAA QELSNRLVIN GQRLKLTWGR
301: PKPDQDGANQ QGGVAHSGLL PRAVISQQHN QPPPMQQYYM HPPPANQDKP YYPSMDPQRM GAVISTQEAG GSSTENNGAS SSSYMMPPHQ SYPPPPYGYM
401: PSPYQQQYPP NHHHQPSPMQ HYAPPPAAYP YPQQPGPGSR PAPSPTAVSA ISPDSAPAGS GAPSGSSQQA PDVSTATGSS Q

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.