Factsheet for PGSC0003DMT400075131

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70201	Canola	nucleus	41.24	14.13
CDX86491	Canola	nucleus	59.79	13.12
AT1G07360.1	Thale cress	nucleus	62.89	12.68
Bra009429.1-P	Field mustard	nucleus	41.24	12.62
CDY15609	Canola	nucleus	61.86	12.53
PGSC0003DMT400021046	Potato	cytosol	61.86	12.53
Bra030679.1-P	Field mustard	nucleus	61.86	12.5
GSMUA_Achr8P23920_001	Banana	cytosol, nucleus, plastid	59.79	12.21
GSMUA_Achr11P...	Banana	cytosol	58.76	12.1
Bra039988.1-P	Field mustard	nucleus	55.67	11.92
Os06t0170500-01	Rice	nucleus	58.76	11.83
AT2G29580.1	Thale cress	nucleus	58.76	11.8
Os07t0281000-01	Rice	cytosol, nucleus, plastid	58.76	11.73
EER89290	Sorghum	cytosol, nucleus, plastid	58.76	11.61
EES07378	Sorghum	cytosol, nucleus, plastid	58.76	11.61
CDY51359	Canola	nucleus	54.64	11.57
Zm00001d045183_P001	Maize	extracellular, plasma membrane	58.76	11.56
CDX97876	Canola	nucleus	54.64	11.5
CDY53361	Canola	nucleus	36.08	11.44
TraesCS7A01G131700.1	Wheat	nucleus	57.73	11.27
TraesCS7B01G032400.1	Wheat	nucleus	57.73	11.27
TraesCS7D01G131000.1	Wheat	cytosol	57.73	11.27
AT5G07060.1	Thale cress	nucleus	41.24	11.02
HORVU7Hr1G027490.1	Barley	cytosol, mitochondrion, nucleus	57.73	10.49
CDY70348	Canola	nucleus	21.65	6.93
CDY44880	Canola	nucleus	21.65	6.93

Protein Annotations

EnsemblPlants:PGSC0003DMT400075131	EnsemblPlantsGene:PGSC0003DMG400029225	GO:GO:0000398	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	PANTHER:PTHR14089	PANTHER:PTHR14089:SF6	PGSC:PGSC0003DMG400029225	UniParc:UPI000295B198	UniProt:M1CUP5
MapMan:35.1	:	:	:	:	:

Description

RRM-containing RNA-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029225]

Coordinates

chr4:+:10706365..10709162

Molecular Weight (calculated)

11426.9 Da

IEP (calculated)

8.197

GRAVY (calculated)

-0.666

Length

97 amino acids

Sequence
(BLAST)

1: MEKSVQMTLK LQRTTPYYKR NQAHVCSFYI RGQCECPYRH EMPETGELSQ PNIKDRYYGQ ADYDKECKIC TRPLCSKLKN VCQVCHLDLE YGLPVLV

Best Arabidopsis Sequence Match ( AT1G07360.1 )
(BLAST)

001: MAHRILRDHE ADGWERSDFP IICESCLGDN PYVRMTKANY DKECKICTRP FTVFRWRPGR DARYKKTEIC QTCCKLKNVC QVCLLDLEYG LPVQVRDTAL
101: NISTHDSIPK SDVNREYFAE EHDRKARAGL DYESSFGKMR PNDTILKLQR TTPYYKRNRA HVCSFFIRGE CTRGAECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVAMKLL GKAGEMGTLE SPDDESIKTL YVGGLNSRIL EQDIRDQFYA HGEIESIRIL ADKACAFVTY TSREGAEKAA QELSNRLVIN GQRLKLTWGR
301: PKPDQDGANQ QGGVAHSGLL PRAVISQQHN QPPPMQQYYM HPPPANQDKP YYPSMDPQRM GAVISTQEAG GSSTENNGAS SSSYMMPPHQ SYPPPPYGYM
401: PSPYQQQYPP NHHHQPSPMQ HYAPPPAAYP YPQQPGPGSR PAPSPTAVSA ISPDSAPAGS GAPSGSSQQA PDVSTATGSS Q

Arabidopsis Description

Zinc finger CCCH domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.