CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51359	Canola	nucleus	96.75	97.38
Bra039988.1-P	Field mustard	nucleus	90.02	91.61
AT2G29580.1	Thale cress	nucleus	83.51	79.71
CDY15609	Canola	nucleus	78.31	75.37
CDX86491	Canola	nucleus	68.11	71.04
GSMUA_Achr11P...	Banana	cytosol	64.21	62.84
Os06t0170500-01	Rice	nucleus	63.34	60.58
GSMUA_Achr8P23920_001	Banana	cytosol, nucleus, plastid	62.04	60.21
CDX70201	Canola	nucleus	36.88	60.07
Os07t0281000-01	Rice	cytosol, nucleus, plastid	62.91	59.67
EES07378	Sorghum	cytosol, nucleus, plastid	63.12	59.27
EER89290	Sorghum	cytosol, nucleus, plastid	62.91	59.06
TraesCS7D01G131000.1	Wheat	cytosol	63.56	58.95
TraesCS7A01G131700.1	Wheat	nucleus	63.56	58.95
Zm00001d045183_P001	Maize	extracellular, plasma membrane	62.91	58.82
TraesCS7B01G032400.1	Wheat	nucleus	63.34	58.75
CDY70348	Canola	nucleus	37.53	57.1
CDY44880	Canola	nucleus	37.53	57.1
PGSC0003DMT400075131	Potato	cytosol	11.5	54.64
HORVU7Hr1G027490.1	Barley	cytosol, mitochondrion, nucleus	63.12	54.49
CDY53361	Canola	nucleus	35.79	53.92
CDY51311	Canola	nucleus	7.16	44.0
CDX70237	Canola	extracellular	15.4	36.79
CDX72949	Canola	nucleus	6.29	22.31
CDX70241	Canola	cytosol	18.87	21.91
CDX70240	Canola	cytosol	6.94	15.69

Protein Annotations

MapMan:15.5.16	MapMan:16.4.5.2.1	Gene3D:3.30.70.330	Gene3D:4.10.1000.10	GO:A0A078E9I0	EnsemblPlants:CDX97876
ProteinID:CDX97876	ProteinID:CDX97876.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0046872
EnsemblPlantsGene:GSBRNA2T00105211001	InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF16131	PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR14089	PANTHER:PTHR14089:SF6	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00356	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF90229	InterPro:Torus
UniParc:UPI0004EF1F73	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:	:

Description

BnaC04g40630D

Coordinates

chrLK031901:-:1171926..1174532

Molecular Weight (calculated)

52076.8 Da

IEP (calculated)

7.224

GRAVY (calculated)

-0.985

Length

461 amino acids

Sequence
(BLAST)

001: MAHRILRDHD ADGWERADFP IICESCLGDN PYVRMTKSDY DKECKICTRP FTVFRWRPGR DARYKKTEVC QTCCKLKNVC QVCLLDLEYG LPVQARDTAL
101: NISTHDSIPK SDVNREFFAE EHDRKTRAGL DYESSFGKIR PNDTIRMLQR TTPYYKRNRA HICSFFIRGE CTRGEECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVALKLL GKAGEMGTLE TPDDQSIKTL YVGGLNSRVL EQDIRDQFYA YGEIESIRIL AEKACAFVTY TTREGAEKAA EELSNKLVVN GQRLKISWGR
301: PQAPRTDPDG GGSQQQGGQH NQPPPMQQYY MHPPPPQQPH QDRPFYPSMD PQRMGAVTSS QDSGDNRMPP HGHYQQHQPY PPQPYGGYMQ QPYQQHPPYH
401: HGPPQAAHPY PQQQQQPGTG SRPNPPPPSS VSAPPPESVS HAPSGSSSQQ SAEAAVTGTS Q

Best Arabidopsis Sequence Match ( AT2G29580.1 )
(BLAST)

001: MAHRILRDHE ADGWERSDFP IICESCLGDN PYVRMTKANY DKECKICTRP FTVFRWRPGR DARYKKTEVC QTCCKLKNVC QVCLLDLEYG LPVQVRDTAL
101: NISTHDSIPK SDVNREFFAE EHDRKTRAGL DYESSFGKIR PNDTIRMLQR TTPYYKRNRA HICSFFIRGE CTRGDECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVALKLL GKAGEMGTLE SPEDQSIRTL YVGGLNSRVL EQDIRDQFYA HGEIESIRIL AEKACAFVTY TTREGAEKAA EELSNRLVVN GQRLKLTWGR
301: PQVPKPDQDG SNQQGSVAHS GLLPRAVISQ QQNQPPPMLQ YYMHPPPPQP PHQDRPFYPS MDPQRMGAVS SSKESGSSTS DNRGASSSSY TMPPHGHYPQ
401: HQPYPPPSYG GYMQPPYQQY PPYHHGHSQQ ADHDYPQQPG PGSRPNPPHP SSVSAPPPDS VSAAPSGSSQ QSADAAVTTG SSQ

Arabidopsis Description

Zinc finger CCCH domain-containing protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW36]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.