Factsheet for HORVU7Hr1G027490.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
TargetP:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G131000.1	Wheat	cytosol	91.57	98.39
TraesCS7A01G131700.1	Wheat	nucleus	91.2	97.99
TraesCS7B01G032400.1	Wheat	nucleus	91.2	97.99
Os06t0170500-01	Rice	nucleus	79.4	87.97
Os07t0281000-01	Rice	cytosol, nucleus, plastid	79.21	87.04
EES07378	Sorghum	cytosol, nucleus, plastid	79.78	86.76
EER89290	Sorghum	cytosol, nucleus, plastid	79.03	85.95
Zm00001d045183_P001	Maize	extracellular, plasma membrane	78.65	85.19
VIT_06s0004g05990.t01	Wine grape	cytosol	34.83	84.93
GSMUA_Achr11P...	Banana	cytosol	68.54	77.71
GSMUA_Achr8P23920_001	Banana	cytosol, nucleus, plastid	67.79	76.21
KRH18690	Soybean	nucleus	63.48	72.59
Solyc04g017710.2.1	Tomato	nucleus	64.79	72.23
KRG89828	Soybean	nucleus	64.23	71.31
PGSC0003DMT400021046	Potato	cytosol	63.86	71.19
Solyc10g079190.1.1	Tomato	nucleus	63.67	70.98
KRH14167	Soybean	nucleus	64.04	70.95
KRH73960	Soybean	nucleus	63.48	70.04
CDY15609	Canola	nucleus	58.61	65.34
AT1G07360.1	Thale cress	nucleus	58.8	65.28
Bra030679.1-P	Field mustard	nucleus	58.43	65.0
Bra009429.1-P	Field mustard	nucleus	38.2	64.35
CDX86491	Canola	nucleus	52.81	63.8
AT2G29580.1	Thale cress	nucleus	57.68	63.77
CDY51359	Canola	nucleus	54.68	63.76
Bra039988.1-P	Field mustard	nucleus	53.93	63.58
CDX97876	Canola	nucleus	54.49	63.12
AT5G07060.1	Thale cress	nucleus	42.13	61.98
CDX70201	Canola	nucleus	32.58	61.48
VIT_06s0004g06000.t01	Wine grape	nucleus	30.71	59.21
PGSC0003DMT400075131	Potato	cytosol	10.49	57.73
CDY70348	Canola	nucleus	32.58	57.43
CDY44880	Canola	nucleus	32.58	57.43
CDY53361	Canola	nucleus	27.34	47.71
CDY51311	Canola	nucleus	5.43	38.67
CDX70237	Canola	extracellular	12.17	33.68
AT5G04210.1	Thale cress	cytosol	11.98	33.16
Bra009465.1-P	Field mustard	cytosol	16.48	24.44
CDX70241	Canola	cytosol	16.67	22.42
Bra009466.1-P	Field mustard	cytosol	17.23	21.85
CDX72949	Canola	nucleus	5.24	21.54
CDX70240	Canola	cytosol	6.37	16.67

Protein Annotations

MapMan:15.5.16	MapMan:16.4.5.2.1	Gene3D:3.30.70.330	Gene3D:4.10.1000.10	UniProt:A0A287VU71	GO:GO:0000398
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0046872	EnsemblPlantsGene:HORVU7Hr1G027490	EnsemblPlants:HORVU7Hr1G027490.1	InterPro:IPR000504
InterPro:IPR000571	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF16131	PFscan:PS50102
PFscan:PS50103	PANTHER:PTHR14089	PANTHER:PTHR14089:SF6	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00356
SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF90229	InterPro:Torus	UniParc:UPI000B461B34	InterPro:Znf_CCCH
InterPro:Znf_CCCH_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr7H:-:49104229..49107915

Molecular Weight (calculated)

59215.9 Da

IEP (calculated)

8.389

GRAVY (calculated)

-0.772

Length

534 amino acids

Sequence
(BLAST)

001: ERESPVARRG RLIEIEVSSR AASSRSRSRC LLSAAAMAHR LLRDAQADGW ERSDFPIICE SCLGDNPYVR MLRAEYDKEC KICARPFTVF RWRPGRDARY
101: KKTEICQTCC KLKNVCQVCL LDLEYGLPVQ VRDTALAINS NDAIPRSDVN REYFAEEHDR KAAAGIDYDS SYGKARPNDT ILKLQRTSPY YKRNRAHVCS
201: FYVRGECTRG AECPYRHEMP ETGELSQQNI KDRYYGVNDP VALKLLGKAG EMPSLQPPDD ETIRTLYIGG LDNRVSEQDL RDQFYAHGEI ESIRMVIQRA
301: CAFVTYTTRE GAERAAEELA NKLVIKGVRL KLMWGKPQAP RPDDDEAGRQ GHVSHGGLLP RAVISQQQSS DQPQPPGMEG QQQVAPPGSG YFNIPPPPAV
401: DQRMYPSMDP QRMGAVVRSQ EGDGSKPGPQ HAGQAQASSS SGQGYPMRPP LPPYYHGGAQ YPPYYPPPPY GGGYMAPPRM PYPPQYPPYR PMLAPPAQQP
501: QGSSSQQPAG QQQAQAPPAQ QQPPPAAAAA AAQN

Best Arabidopsis Sequence Match ( AT1G07360.1 )
(BLAST)

001: MAHRILRDHE ADGWERSDFP IICESCLGDN PYVRMTKANY DKECKICTRP FTVFRWRPGR DARYKKTEIC QTCCKLKNVC QVCLLDLEYG LPVQVRDTAL
101: NISTHDSIPK SDVNREYFAE EHDRKARAGL DYESSFGKMR PNDTILKLQR TTPYYKRNRA HVCSFFIRGE CTRGAECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVAMKLL GKAGEMGTLE SPDDESIKTL YVGGLNSRIL EQDIRDQFYA HGEIESIRIL ADKACAFVTY TSREGAEKAA QELSNRLVIN GQRLKLTWGR
301: PKPDQDGANQ QGGVAHSGLL PRAVISQQHN QPPPMQQYYM HPPPANQDKP YYPSMDPQRM GAVISTQEAG GSSTENNGAS SSSYMMPPHQ SYPPPPYGYM
401: PSPYQQQYPP NHHHQPSPMQ HYAPPPAAYP YPQQPGPGSR PAPSPTAVSA ISPDSAPAGS GAPSGSSQQA PDVSTATGSS Q

Arabidopsis Description

Zinc finger CCCH domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.