Factsheet for Bra009465.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70240	Canola	cytosol	39.72	70.1
AT5G04210.1	Thale cress	cytosol	20.83	38.86
Bra009466.1-P	Field mustard	cytosol	27.78	23.75
Bra009429.1-P	Field mustard	nucleus	18.61	21.14
Bra030679.1-P	Field mustard	nucleus	26.94	20.21
Bra039988.1-P	Field mustard	nucleus	25.0	19.87
VIT_06s0004g05990.t01	Wine grape	cytosol	11.94	19.63
PGSC0003DMT400021046	Potato	cytosol	25.56	19.21
KRH18690	Soybean	nucleus	24.72	19.06
GSMUA_Achr11P...	Banana	cytosol	24.72	18.9
Solyc10g079190.1.1	Tomato	nucleus	25.0	18.79
VIT_06s0004g06000.t01	Wine grape	nucleus	14.44	18.77
Os07t0281000-01	Rice	cytosol, nucleus, plastid	25.0	18.52
KRH14167	Soybean	nucleus	24.72	18.46
Os06t0170500-01	Rice	nucleus	24.72	18.46
KRH73960	Soybean	nucleus	24.72	18.39
EER89290	Sorghum	cytosol, nucleus, plastid	25.0	18.33
KRG89828	Soybean	nucleus	24.44	18.3
Zm00001d045183_P001	Maize	extracellular, plasma membrane	25.0	18.26
EES07378	Sorghum	cytosol, nucleus, plastid	24.72	18.13
GSMUA_Achr8P23920_001	Banana	cytosol, nucleus, plastid	23.89	18.11
Solyc04g017710.2.1	Tomato	nucleus	23.89	17.95
TraesCS7A01G131700.1	Wheat	nucleus	24.44	17.71
TraesCS7B01G032400.1	Wheat	nucleus	24.44	17.71
TraesCS7D01G131000.1	Wheat	cytosol	24.44	17.71
HORVU7Hr1G027490.1	Barley	cytosol, mitochondrion, nucleus	24.44	16.48

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EnsemblPlantsGene:Bra009465	EnsemblPlants:Bra009465.1	EnsemblPlants:Bra009465.1-P	GO:GO:0000398
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0046872	InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677
UniProt:M4CZ18	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR14089
PANTHER:PTHR14089:SF6	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000254796C
InterPro:Znf_CCCH	:	:	:	:	:

Description

AT5G04210 (E=3e-035) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA10:-:16770636..16776581

Molecular Weight (calculated)

41293.2 Da

IEP (calculated)

6.049

GRAVY (calculated)

-0.333

Length

360 amino acids

Sequence
(BLAST)

001: MAGREMFPVV ECYGTEVLTS ENSETEISVP FYRVRGRSFT RTIFRPTVGF DLLLGQVRDE APMYEFSPYL PLDALENREK LHQCILEYPP PENIRVIPDH
101: FNDLGWNWYH TATVLSNYVH DVVFNNITPF AVEGDEAFGT VILMRQDNRW HRESWRLNAP EPMLSRECTI CGDPLTYTPI DYLLGLQSQL GRFDGHPLVC
201: GFFKSGRTCM AGATCPFAHK VPRVFDSRTG LDNPKTVELL ARNVYMGPVD PPLDQTLKTL YLRRLNSSVH EQHIRDRFNP YGEIKSIVYF AMRGVDGAFL
301: TYTTREGAEK AMLEHSSWVV INGQNVKLLW GAHVIPKEAV VQENDQPQDH DRDVSRILIH

Best Arabidopsis Sequence Match ( AT5G04210.1 )
(BLAST)

001: MAQIEDKSRK LDCIPICPLF DAGRQCTRGT MCLYRHEINR GLDCHGRSGL ENPFVLEVLA RACNTGPLKP PEDQSIKTLY IRRLINSSVL EQDIRDHFCP
101: YGEIESIVIF PHRGGGTCAF LTYTTRLAAE KAMLELSSWT DIKGQRVKLL WGPTEKWQHK MTGAAISSTQ EVGSSSSNTA DLVTKLVHSL EKL

Arabidopsis Description

CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9FYE0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.