Factsheet for Bra039988.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97876	Canola	nucleus	91.61	90.02
CDY51359	Canola	nucleus	90.51	89.52
AT2G29580.1	Thale cress	nucleus	83.89	78.67
Bra030679.1-P	Field mustard	nucleus	78.59	74.17
Bra009429.1-P	Field mustard	nucleus	44.59	63.72
GSMUA_Achr11P...	Banana	cytosol	64.9	62.42
Os06t0170500-01	Rice	nucleus	64.02	60.17
GSMUA_Achr8P23920_001	Banana	cytosol, nucleus, plastid	62.91	60.0
Os07t0281000-01	Rice	cytosol, nucleus, plastid	63.36	59.05
EER89290	Sorghum	cytosol, nucleus, plastid	63.8	58.86
EES07378	Sorghum	cytosol, nucleus, plastid	63.8	58.86
Zm00001d045183_P001	Maize	extracellular, plasma membrane	63.58	58.42
TraesCS7A01G131700.1	Wheat	nucleus	63.58	57.95
TraesCS7D01G131000.1	Wheat	cytosol	63.58	57.95
TraesCS7B01G032400.1	Wheat	nucleus	63.36	57.75
PGSC0003DMT400075131	Potato	cytosol	11.92	55.67
HORVU7Hr1G027490.1	Barley	cytosol, mitochondrion, nucleus	63.58	53.93
Bra009465.1-P	Field mustard	cytosol	19.87	25.0
Bra009466.1-P	Field mustard	cytosol	19.21	20.67

Protein Annotations

MapMan:15.5.16	MapMan:16.4.5.2.1	Gene3D:3.30.70.330	Gene3D:4.10.1000.10	EnsemblPlantsGene:Bra039988	EnsemblPlants:Bra039988.1
EnsemblPlants:Bra039988.1-P	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0046872	InterPro:IPR000504
InterPro:IPR000571	InterPro:IPR012677	UniProt:M4FFW4	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF16131
PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR14089	PANTHER:PTHR14089:SF6	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00356	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF90229	InterPro:Torus	UniParc:UPI000254440F
InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:	:	:

Description

AT2G29580 (E=2e-178) | zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein

Coordinates

chrA04:+:13240009..13241705

Molecular Weight (calculated)

51294.0 Da

IEP (calculated)

6.996

GRAVY (calculated)

-0.962

Length

453 amino acids

Sequence
(BLAST)

001: MAHRILRDHD ADGWERADFP IICESCLGDN PYVRMTKSDY DKECKICTRP FTVFRWRPGR DARYKKTEVC QTCCKLKNVC QVCLLDLEYG LPVQARDTAL
101: NISTHDSIPK SDVNREFFAE EHDRKTRAGL DYESSFGKIR PNDTIRMLQR TTPYYKRNRA HICSFFIRGE CTRGEECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVALKLL GKAGEMGTLE TPDDQSIKTL YVGGLNSRVL EQDIRDQFYA YGEIEPIRIL AEKACAFVTY TTREGAEKAA EELSNKLVVN GQRLKISWGR
301: PQAPRTDPDG GGSQQQPPPM QQYYMHPPPP QPHQDRPFYP SMDPQRMGAV TSSQDSGDNR MPPHGHYQQH QPYPPQPYGG YMQQPYQQYP PYHHGPPQAP
401: HPYPQQQQQP GPGSRPNPPP SSVSAPPPDS VSDGPSGSSS QQSAEAAVTL TSQ

Best Arabidopsis Sequence Match ( AT2G29580.1 )
(BLAST)

001: MAHRILRDHE ADGWERSDFP IICESCLGDN PYVRMTKANY DKECKICTRP FTVFRWRPGR DARYKKTEVC QTCCKLKNVC QVCLLDLEYG LPVQVRDTAL
101: NISTHDSIPK SDVNREFFAE EHDRKTRAGL DYESSFGKIR PNDTIRMLQR TTPYYKRNRA HICSFFIRGE CTRGDECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVALKLL GKAGEMGTLE SPEDQSIRTL YVGGLNSRVL EQDIRDQFYA HGEIESIRIL AEKACAFVTY TTREGAEKAA EELSNRLVVN GQRLKLTWGR
301: PQVPKPDQDG SNQQGSVAHS GLLPRAVISQ QQNQPPPMLQ YYMHPPPPQP PHQDRPFYPS MDPQRMGAVS SSKESGSSTS DNRGASSSSY TMPPHGHYPQ
401: HQPYPPPSYG GYMQPPYQQY PPYHHGHSQQ ADHDYPQQPG PGSRPNPPHP SSVSAPPPDS VSAAPSGSSQ QSADAAVTTG SSQ

Arabidopsis Description

Zinc finger CCCH domain-containing protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW36]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.