Factsheet for Bra030679.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15609	Canola	nucleus	99.58	99.79
CDX86491	Canola	nucleus	85.83	93.21
AT1G07360.1	Thale cress	nucleus	90.42	90.23
Bra039988.1-P	Field mustard	nucleus	74.17	78.59
Bra009429.1-P	Field mustard	nucleus	45.21	68.45
GSMUA_Achr11P...	Banana	cytosol	64.79	66.03
GSMUA_Achr8P23920_001	Banana	cytosol, nucleus, plastid	63.75	64.42
Os06t0170500-01	Rice	nucleus	64.38	64.11
EES07378	Sorghum	cytosol, nucleus, plastid	64.79	63.34
TraesCS7B01G032400.1	Wheat	nucleus	65.42	63.18
EER89290	Sorghum	cytosol, nucleus, plastid	64.58	63.14
TraesCS7A01G131700.1	Wheat	nucleus	65.21	62.98
TraesCS7D01G131000.1	Wheat	cytosol	65.21	62.98
Os07t0281000-01	Rice	cytosol, nucleus, plastid	63.75	62.96
Zm00001d045183_P001	Maize	extracellular, plasma membrane	64.38	62.68
PGSC0003DMT400075131	Potato	cytosol	12.5	61.86
HORVU7Hr1G027490.1	Barley	cytosol, mitochondrion, nucleus	65.0	58.43
Bra009465.1-P	Field mustard	cytosol	20.21	26.94
Bra009466.1-P	Field mustard	cytosol	18.75	21.38

Protein Annotations

MapMan:15.5.16	MapMan:16.4.5.2.1	Gene3D:3.30.70.330	Gene3D:4.10.1000.10	EnsemblPlantsGene:Bra030679	EnsemblPlants:Bra030679.1
EnsemblPlants:Bra030679.1-P	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605	GO:GO:0009607	GO:GO:0009987
GO:GO:0042742	GO:GO:0046872	InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677	UniProt:M4EPF9
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF16131	PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR14089
PANTHER:PTHR14089:SF6	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00356	SMART:SM00360	SUPFAM:SSF54928
SUPFAM:SSF90229	InterPro:Torus	UniParc:UPI0002546F40	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg

Description

AT1G07360 (E=3e-196) | zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein

Coordinates

chrA08:+:20836142..20838473

Molecular Weight (calculated)

53526.7 Da

IEP (calculated)

7.288

GRAVY (calculated)

-0.853

Length

480 amino acids

Sequence
(BLAST)

001: MAHRILRDHD ADGWERSDFP IVCESCLGDN PYVRMTKAEY DKECKICTRP FTVFRWRPGR DARYKKTEIC QTCCKLKNVC QVCLLDLEYG LPVQARDTAL
101: NISTHDSIPK SDVNREYFAE EHDRKTRAGL DYESSFGKMR PNDTILKLQR TTPYYKRNRA HVCSFFIRGE CTRGEECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVAMKLL GKAGEMGTLE SPDDQSIKTL YVGGLNSRIL EQDLRDQFYA YGEIESIRIL ADKACAFVTY TAREGAEKAA QELSNRLVVN GQRLKLMWGR
301: PQAPRPDQDG SNQQGGVAHS GLLPRAVISQ QHNQPPPMQQ YYMHPPPPNQ DKPYYPSMDP QRMGAVISTQ EAGGSSTENN GGSSSSYMMP PHQPYPPAPY
401: GYMPSPYQQQ YPGPMHHHYA PPPAAYQSYP QQPGPGSKPA PSPSAVSAPP PDSAPAGSSA PSGSSQQPPT ASTTTDSSSQ

Best Arabidopsis Sequence Match ( AT1G07360.1 )
(BLAST)

001: MAHRILRDHE ADGWERSDFP IICESCLGDN PYVRMTKANY DKECKICTRP FTVFRWRPGR DARYKKTEIC QTCCKLKNVC QVCLLDLEYG LPVQVRDTAL
101: NISTHDSIPK SDVNREYFAE EHDRKARAGL DYESSFGKMR PNDTILKLQR TTPYYKRNRA HVCSFFIRGE CTRGAECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVAMKLL GKAGEMGTLE SPDDESIKTL YVGGLNSRIL EQDIRDQFYA HGEIESIRIL ADKACAFVTY TSREGAEKAA QELSNRLVIN GQRLKLTWGR
301: PKPDQDGANQ QGGVAHSGLL PRAVISQQHN QPPPMQQYYM HPPPANQDKP YYPSMDPQRM GAVISTQEAG GSSTENNGAS SSSYMMPPHQ SYPPPPYGYM
401: PSPYQQQYPP NHHHQPSPMQ HYAPPPAAYP YPQQPGPGSR PAPSPTAVSA ISPDSAPAGS GAPSGSSQQA PDVSTATGSS Q

Arabidopsis Description

Zinc finger CCCH domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.