Factsheet for Bra009466.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70241	Canola	cytosol	92.4	97.98
AT5G04210.1	Thale cress	cytosol	18.05	39.38
Bra009465.1-P	Field mustard	cytosol	23.75	27.78
VIT_06s0004g06000.t01	Wine grape	nucleus	15.44	23.47
Bra039988.1-P	Field mustard	nucleus	20.67	19.21
Os07t0281000-01	Rice	cytosol, nucleus, plastid	22.09	19.14
Os06t0170500-01	Rice	nucleus	21.85	19.09
KRG89828	Soybean	nucleus	21.62	18.92
KRH73960	Soybean	nucleus	21.62	18.8
Bra030679.1-P	Field mustard	nucleus	21.38	18.75
EER89290	Sorghum	cytosol, nucleus, plastid	21.85	18.74
GSMUA_Achr11P...	Banana	cytosol	20.9	18.68
EES07378	Sorghum	cytosol, nucleus, plastid	21.62	18.53
TraesCS7B01G032400.1	Wheat	nucleus	21.85	18.51
TraesCS7D01G131000.1	Wheat	cytosol	21.85	18.51
KRH14167	Soybean	nucleus	21.14	18.46
GSMUA_Achr8P23920_001	Banana	cytosol, nucleus, plastid	20.67	18.32
TraesCS7A01G131700.1	Wheat	nucleus	21.62	18.31
Zm00001d045183_P001	Maize	extracellular, plasma membrane	21.38	18.26
KRH18690	Soybean	nucleus	19.95	17.99
Solyc04g017710.2.1	Tomato	nucleus	20.19	17.75
Solyc10g079190.1.1	Tomato	nucleus	19.71	17.33
PGSC0003DMT400021046	Potato	cytosol	19.71	17.33
HORVU7Hr1G027490.1	Barley	cytosol, mitochondrion, nucleus	21.85	17.23
Bra009429.1-P	Field mustard	nucleus	10.45	13.88
VIT_06s0004g05990.t01	Wine grape	cytosol	5.7	10.96

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EnsemblPlantsGene:Bra009466	EnsemblPlants:Bra009466.1	EnsemblPlants:Bra009466.1-P	GO:GO:0000398
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0046872	InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677
UniProt:M4CZ19	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00642	PFscan:PS50102	PFscan:PS50103
PANTHER:PTHR14089	PANTHER:PTHR14089:SF6	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00356	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000254796D	InterPro:Znf_CCCH	SEG:seg	:	:

Description

AT5G04210 (E=2e-035) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA10:-:16798971..16800535

Molecular Weight (calculated)

45296.8 Da

IEP (calculated)

6.855

GRAVY (calculated)

-0.701

Length

421 amino acids

Sequence
(BLAST)

001: MKDQRNRILS RSKSKLGVYM QSQVDRFRMN RPAICGFFES GRTCSAGDEC PFSHSFPRNS NAHRTTGLSD PNPDPGTVDL LFKMVYMGPL DPPRDQTVKT
101: LYLRRLNSNV QEEHLRDRFS PYGEIESIVY FGMRGVSCAF LTYTTRQAAE KAMLEHSSWV DVNGQMLKLL WGTHRIPKDA ELVGGSNLVK HDGGGFAWVK
201: ENKDGGQVPY WCKRGYGSSE QLGGWGFDGR RGWDAGIGGS NWAKANAVGG FGECFNWGRA NDGISSWGKD NYSSGGSNWG NQVVGSSWGQ QDGCGFAWGS
301: QNNNYGGGGP SWSSLGDGGR GFGGRRGYWG SWDFSSKNTG GGWEANTGGF LEANTGGGWE AHTGGGWGAN AGGGWDANTG GFLEANTGGG WETNTGDDDA
401: WGCKPNVGAS SSSGSWVTVD Q

Best Arabidopsis Sequence Match ( AT5G04210.1 )
(BLAST)

001: MAQIEDKSRK LDCIPICPLF DAGRQCTRGT MCLYRHEINR GLDCHGRSGL ENPFVLEVLA RACNTGPLKP PEDQSIKTLY IRRLINSSVL EQDIRDHFCP
101: YGEIESIVIF PHRGGGTCAF LTYTTRLAAE KAMLELSSWT DIKGQRVKLL WGPTEKWQHK MTGAAISSTQ EVGSSSSNTA DLVTKLVHSL EKL

Arabidopsis Description

CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9FYE0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.