CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89828	Soybean	nucleus	90.36	87.73
KRH14167	Soybean	nucleus	87.37	84.65
KRH73960	Soybean	nucleus	86.94	83.88
Solyc10g079190.1.1	Tomato	nucleus	77.94	75.99
PGSC0003DMT400021046	Potato	cytosol	77.94	75.99
Solyc04g017710.2.1	Tomato	nucleus	77.52	75.57
GSMUA_Achr11P...	Banana	cytosol	73.88	73.25
Os06t0170500-01	Rice	nucleus	74.52	72.2
GSMUA_Achr8P23920_001	Banana	cytosol, nucleus, plastid	72.81	71.58
Os07t0281000-01	Rice	cytosol, nucleus, plastid	73.66	70.78
EES07378	Sorghum	cytosol, nucleus, plastid	73.45	69.86
EER89290	Sorghum	cytosol, nucleus, plastid	73.02	69.45
Zm00001d045183_P001	Maize	extracellular, plasma membrane	72.59	68.76
TraesCS7D01G131000.1	Wheat	cytosol	72.81	68.41
TraesCS7A01G131700.1	Wheat	nucleus	72.38	68.01
TraesCS7B01G032400.1	Wheat	nucleus	72.38	68.01
VIT_06s0004g06000.t01	Wine grape	nucleus	39.19	66.06
HORVU7Hr1G027490.1	Barley	cytosol, mitochondrion, nucleus	72.59	63.48
CDY51311	Canola	nucleus	6.0	37.33
AT5G04210.1	Thale cress	cytosol	15.2	36.79
CDX70237	Canola	extracellular	14.35	34.72
Bra009465.1-P	Field mustard	cytosol	19.06	24.72
CDX72949	Canola	nucleus	6.21	22.31
CDX70241	Canola	cytosol	17.34	20.4
Bra009466.1-P	Field mustard	cytosol	17.99	19.95
CDX70240	Canola	cytosol	7.07	16.18

Protein Annotations

EntrezGene:100789382	MapMan:15.5.16	MapMan:16.4.5.2.1	Gene3D:3.30.70.330	Gene3D:4.10.1000.10	EMBL:ACUP02008118
EnsemblPlantsGene:GLYMA_13G076300	GO:GO:0000387	GO:GO:0000398	GO:GO:0000974	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0017070
GO:GO:0036002	GO:GO:0046872	GO:GO:0071006	GO:GO:0071007	UniProt:I1LW99	InterPro:IPR000504
InterPro:IPR000571	InterPro:IPR012677	EnsemblPlants:KRH18690	ProteinID:KRH18690	ProteinID:KRH18690.1	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF16131	PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR14089	PANTHER:PTHR14089:SF6
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00356	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF90229
InterPro:Torus	UniParc:UPI000233B52A	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr13:+:18034744..18039221

Molecular Weight (calculated)

52740.2 Da

IEP (calculated)

7.507

GRAVY (calculated)

-0.831

Length

467 amino acids

Sequence
(BLAST)

001: MAHRLLRDHE ADGWERSDFP IICESCLGDS PYVRMTKAEY DKECKICTRP FTVFRWRPGR DARYKKTEIC QTCSKLKNVC QVCLLDLEYG LPVQVRDSAL
101: SIDSNDAIPK SDVNREYFAE EHDRKARAGI DYESSYGKVR PNDTILKLQR TTPYYKRNRA HICSFYIRGE CTRGAECPYR HEMPVTGELS QQNIKDRYYG
201: VNDPVALKLL GKAGEMSTLE APEDESIKTL YVGGLDARVT EQDLRDHFYA HGEIESIKMV LQRACAFVTY TTREGAEKAA EELSNKLVIK GLRLKLMWGR
301: PQTTKPESDG SDQARQQASV AHSGLLPRAV ISQKQSQDQT QGMLYYNNLP PPQQERSYYP SMDPRRMGAL VSSQDAPGGP SGSEENNPGL EKQQMQHYAH
401: PMMPPPPGQY HQYYPPYGYM PPPPPYHQYP QPPYNAAAAP SQPPAAAPSQ PPAANHPYPH SMQPGSS

Best Arabidopsis Sequence Match ( AT1G07360.1 )
(BLAST)

001: MAHRILRDHE ADGWERSDFP IICESCLGDN PYVRMTKANY DKECKICTRP FTVFRWRPGR DARYKKTEIC QTCCKLKNVC QVCLLDLEYG LPVQVRDTAL
101: NISTHDSIPK SDVNREYFAE EHDRKARAGL DYESSFGKMR PNDTILKLQR TTPYYKRNRA HVCSFFIRGE CTRGAECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVAMKLL GKAGEMGTLE SPDDESIKTL YVGGLNSRIL EQDIRDQFYA HGEIESIRIL ADKACAFVTY TSREGAEKAA QELSNRLVIN GQRLKLTWGR
301: PKPDQDGANQ QGGVAHSGLL PRAVISQQHN QPPPMQQYYM HPPPANQDKP YYPSMDPQRM GAVISTQEAG GSSTENNGAS SSSYMMPPHQ SYPPPPYGYM
401: PSPYQQQYPP NHHHQPSPMQ HYAPPPAAYP YPQQPGPGSR PAPSPTAVSA ISPDSAPAGS GAPSGSSQQA PDVSTATGSS Q

Arabidopsis Description

Zinc finger CCCH domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.