Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
endoplasmic reticulum: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH41788 | Soybean | nucleus | 92.49 | 92.86 |
| VIT_17s0000g02840.t01 | Wine grape | cytosol, mitochondrion, nucleus | 58.1 | 71.01 |
| PGSC0003DMT400014424 | Potato | nucleus | 65.61 | 66.14 |
| Solyc03g119010.2.1 | Tomato | nucleus | 62.06 | 65.42 |
| AT3G18165.1 | Thale cress | cytosol | 62.45 | 62.45 |
| Bra022288.1-P | Field mustard | nucleus | 61.26 | 61.26 |
| CDX92209 | Canola | nucleus | 61.26 | 61.26 |
| CDY24431 | Canola | nucleus | 61.26 | 61.26 |
| GSMUA_Achr3P18370_001 | Banana | cytosol | 34.39 | 60.84 |
| CDY24603 | Canola | cytosol | 20.95 | 60.23 |
| CDX95551 | Canola | cytosol | 60.08 | 60.08 |
| Bra021297.1-P | Field mustard | cytosol | 59.29 | 59.29 |
| EES00531 | Sorghum | cytosol | 57.71 | 57.48 |
| TraesCS3D01G186100.1 | Wheat | cytosol | 56.92 | 56.25 |
| TraesCS3A01G181200.1 | Wheat | nucleus | 56.52 | 55.86 |
| TraesCS3B01G211300.1 | Wheat | cytosol | 56.52 | 55.86 |
| HORVU3Hr1G037080.1 | Barley | plastid | 56.92 | 48.32 |
| Zm00001d040357_P001 | Maize | cytosol | 58.1 | 40.72 |
| GSMUA_Achr3P18380_001 | Banana | cytosol | 28.85 | 36.14 |
| CDY18500 | Canola | cytosol | 59.29 | 25.04 |
Protein Annotations
| EMBL:ACUP02003367 | EnsemblPlants:KRH60495 | EnsemblPlantsGene:GLYMA_05G243600 | EntrezGene:100783349 | GO:GO:0006139 | GO:GO:0006397 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:SPF27 | ncoils:Coil | PANTHER:PTHR13296 |
| PFAM:PF05700 | ProteinID:KRH60495 | ProteinID:KRH60495.1 | UniParc:UPI0001D62DB8 | UniProt:A0A0R0KAQ6 | MapMan:16.4.5.1.1 |
Description
hypothetical protein
Coordinates
chr5:-:41822035..41824178
Molecular Weight (calculated)
29422.9 Da
IEP (calculated)
6.538
GRAVY (calculated)
-0.930
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MADGSNGGVL MLEAPPSYGR PTGSNAEIID ALPYIDDDYA DPRVKLEVDR LVEDEMRRST KKPTDFLKDF PPLPNSNFQQ NYPMIAREYE RVRAGRPPVA
101: LDRSRYELEM PPANKRNDET AWKQALHRAQ HLLQYQIMRM ENLDLMLKYG PDTWKQHNQR LEVYLSRMQK LAQEQNEKIE KVNRERKYHQ QNTAYELNAL
201: SMQWKELCQK NIDISAACAS VENRINELKR GAAERGWNLE AVTENGQLAK SEL
101: LDRSRYELEM PPANKRNDET AWKQALHRAQ HLLQYQIMRM ENLDLMLKYG PDTWKQHNQR LEVYLSRMQK LAQEQNEKIE KVNRERKYHQ QNTAYELNAL
201: SMQWKELCQK NIDISAACAS VENRINELKR GAAERGWNLE AVTENGQLAK SEL
001: MATNNGDVLM LEATPEAARP WASAANAEVI DALPYIDDDY GNPLIKSEVD RLVEEEMRRS SKKPADFLKD LPPLPKFDFK NCPVLGKEYE RVRAGKPPVR
101: IDFESRYKLE MPPANKRNDD AAWKQYLQKN QRSLQQKLIE LENLELMSKL GPELWRQNNH RLEVFLTRMQ RLAQEQNEEI EKVNRERKYH QQTTSYELNA
201: LSQEWRQLCV KNMEIQSACA MLETQIDSFK KEAAERGWNL EEKLENVEPL QMQ
101: IDFESRYKLE MPPANKRNDD AAWKQYLQKN QRSLQQKLIE LENLELMSKL GPELWRQNNH RLEVFLTRMQ RLAQEQNEEI EKVNRERKYH QQTTSYELNA
201: LSQEWRQLCV KNMEIQSACA MLETQIDSFK KEAAERGWNL EEKLENVEPL QMQ
Arabidopsis Description
MOS4Pre-mRNA-splicing factor SPF27 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q949S9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.