CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48908	Soybean	cytosol, nucleus	96.93	96.93
KRH46533	Soybean	cytosol, endoplasmic reticulum, nucleus	86.41	86.69
VIT_15s0021g00480.t01	Wine grape	cytosol	86.57	86.43
GSMUA_Achr2P18210_001	Banana	cytosol	83.66	84.62
GSMUA_Achr11P...	Banana	cytosol	83.5	84.04
PGSC0003DMT400004319	Potato	cytosol	83.01	83.55
Solyc01g088510.2.1	Tomato	nucleus	68.77	83.01
GSMUA_AchrUn_...	Banana	cytosol	83.01	81.56
Os10t0567800-01	Rice	plasma membrane	81.07	81.07
PGSC0003DMT400028286	Potato	cytosol	80.26	81.05
Solyc10g062160.1.1	Tomato	plastid	76.05	80.34
AT3G60190.1	Thale cress	cytosol	81.07	80.29
CDY42672	Canola	cytosol	81.07	80.16
CDX89053	Canola	cytosol	80.91	79.87
Bra014507.1-P	Field mustard	cytosol	80.91	79.87
CDY41188	Canola	cytosol	80.58	79.68
Bra007513.1-P	Field mustard	cytosol	80.42	79.52
CDX71832	Canola	cytosol	80.26	79.36
KXG38886	Sorghum	cytosol	80.26	78.73
TraesCS1B01G227700.1	Wheat	cytosol	79.45	78.56
TraesCS1A01G213900.2	Wheat	cytosol	79.29	78.4
TraesCS1D01G216700.2	Wheat	cytosol	79.13	78.24
Zm00001d030005_P002	Maize	cytosol, mitochondrion	50.65	77.86
KRH41722	Soybean	endoplasmic reticulum, nucleus	77.35	77.47
KRH60421	Soybean	endoplasmic reticulum	77.35	77.47
Os09t0572900-01	Rice	cytosol, plasma membrane	78.16	77.16
KRH04285	Soybean	cytosol	76.21	76.96
PGSC0003DMT400004228	Potato	cytosol	34.95	76.33
KRH49665	Soybean	endoplasmic reticulum	75.73	75.73
EER98546	Sorghum	cytosol	76.21	75.48
KRH70357	Soybean	endoplasmic reticulum, nucleus	75.24	75.24
CDY23444	Canola	cytosol	74.92	74.92
CDY30477	Canola	cytosol	74.92	74.92
Zm00001d005306_P002	Maize	cytosol, extracellular, mitochondrion	76.05	74.84
Bra037643.1-P	Field mustard	cytosol	74.6	74.6
AT2G44590.3	Thale cress	cytosol	72.98	73.69
HORVU1Hr1G054560.1	Barley	mitochondrion	78.48	70.49
KRH47905	Soybean	cytosol, endoplasmic reticulum	67.96	68.97
KRH60047	Soybean	endoplasmic reticulum	66.83	67.7
KRH41321	Soybean	endoplasmic reticulum, nucleus	66.83	67.7
KRH27831	Soybean	cytosol, endoplasmic reticulum, nucleus	66.5	67.38
KRH77654	Soybean	endoplasmic reticulum	66.34	67.21
KRH06461	Soybean	cytosol	53.4	63.58
KRH10618	Soybean	plastid	36.08	27.1
KRH42074	Soybean	endoplasmic reticulum, nucleus	35.44	26.9
KRH21736	Soybean	nucleus	35.92	26.88
KRH49844	Soybean	plastid	35.28	26.85
KRH62781	Soybean	nucleus	35.28	26.68
KRH21193	Soybean	cytosol	19.74	24.6
KRH42928	Soybean	cytosol	23.14	23.87
KRH59040	Soybean	cytosol	25.24	23.11
KRH21190	Soybean	cytosol	24.27	22.56
KRH11082	Soybean	cytosol	5.18	21.92
KRH36411	Soybean	endoplasmic reticulum, nucleus	29.45	19.74
KRH51295	Soybean	endoplasmic reticulum	29.13	19.69
KRH27552	Soybean	cytosol	29.13	19.52
KRH01870	Soybean	endoplasmic reticulum	28.64	19.37
KRH55251	Soybean	plastid	21.68	16.86
KRH26094	Soybean	plastid	21.2	16.29
KRH42202	Soybean	nucleus	19.42	15.98
KRH58326	Soybean	plasma membrane	8.09	10.02

Protein Annotations

Gene3D:1.20.120.1240	EntrezGene:100820166	MapMan:22.1.7.1	Gene3D:3.40.50.300	EMBL:ACUP02001950	InterPro:Dynamin_GTPase
InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF	InterPro:Dynamin_central	InterPro:GED	InterPro:GED_dom	EnsemblPlantsGene:GLYMA_03G102800
GO:GO:0000166	GO:GO:0000266	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005515	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:G_DYNAMIN_dom
UniProt:I1JMI7	InterPro:IPR020850	InterPro:IPR030381	EnsemblPlants:KRH66384	ProteinID:KRH66384	ProteinID:KRH66384.1
InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF01031	PFAM:PF02212	PRINTS:PR00195	ScanProsite:PS00410
PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF73	SMART:SM00053	SMART:SM00302
SUPFAM:SSF52540	UniParc:UPI0002336E97	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:29531223..29538669

Molecular Weight (calculated)

69142.8 Da

IEP (calculated)

7.668

GRAVY (calculated)

-0.339

Length

618 amino acids

Sequence
(BLAST)

001: MTSMESLIGL VNRIQQACTV LGDYGGADNN AFSSLWEALP SVAVVGGQSS GKSSVLESIV GRDFLPRGSG IVTRRPLVLQ LHKVDGKAKE YAEFLHMPGQ
101: KITDYAIVRQ EIQNETDRVT GRTKQISPVP IHLSIYSPHV VNLTLIDLPG LTKVAVEGQP ETIAQDIENM VRSFVDKPNC IILAISPANQ DIATSDAIKL
201: SREVDPSGER TFGVLTKLDL MDRGTNALDV LEGRSYRLQH PWVGVVNRSQ ADINKNVDMI VARRKESEYF ETSPDYGHLA NKMGSVYLAK LLSQHLESVI
301: RQRIPNITSL INKTIEELES EMNQIGRPIA ADAGAQLYTI LELCRAFDRV FKEHLDGGRP GGDRIYNVFD NQLPAALRKL PFDRHLSLQN VRKVVSEADG
401: YQPHLIAPEQ GYRRLIEGAL SYFRGPAEAS VDAVHFVLKE LVRKSIAETQ ELRRFPTLQA EIAAATNEAL ERFREESKKT AMRLVDMEAS YLTVEFFRKL
501: PQEMEKAGNP ANQATPNVDR YGEGHYRRIG SNVSSYISMI SDTLRNTIPK AVVYCQVREA KLSLLNHFYI QIGKKEAKQL SQLLDEDPAL TGRRQQCAKR
601: LELYKAARDE IDSVSWAR

Best Arabidopsis Sequence Match ( AT3G60190.1 )
(BLAST)

001: MTTMESLIGL VNRIQRACTV LGDYGGGTGS NAFNSLWEAL PTVAVVGGQS SGKSSVLESI VGRDFLPRGS GIVTRRPLVL QLHKTDDGTE EYAEFLHLPK
101: KQFTDFALVR REIQDETDRI TGKNKQISPV PIHLSIYSPN VVNLTLIDLP GLTKVAVEGQ PETIAEDIES MVRTYVDKPN CIILAISPAN QDIATSDAIK
201: LAKDVDPTGE RTFGVLTKLD LMDKGTNALE VLEGRSYRLQ HPWVGIVNRS QADINKNVDM MLARRKEREY FDTSPDYGHL ASKMGSEYLA KLLSKHLESV
301: IRTRIPSILS LINKSIEELE RELDRMGRPV AVDAGAQLYT ILEMCRAFDK IFKEHLDGGR PGGDRIYGVF DNQLPAALKK LPFDRHLSLQ SVKKIVSEAD
401: GYQPHLIAPE QGYRRLIEGA LGYFRGPAEA SVDAVHYVLK ELVRKSISET EELKRFPSLQ VELAAAANSS LEKFREESKK SVIRLVDMES AYLTAEFFRK
501: LPQEIERPVT NSKNQTASPS SATLDQYGDG HFRRIASNVS AYVNMVSDTL RNTIPKACVY CQVRQAKLAL LNYFYSQISK REGKQLGQLL DEDPALMDRR
601: LECAKRLELY KKARDEIDAV AWVR

Arabidopsis Description

DRP1EDynamin-related protein 1E [Source:UniProtKB/Swiss-Prot;Acc:Q9FNX5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.