CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 5
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10618	Soybean	plastid	98.31	98.66
KRH62781	Soybean	nucleus	87.17	88.13
KRH49844	Soybean	plastid	86.44	87.93
KRH42074	Soybean	endoplasmic reticulum, nucleus	86.2	87.47
VIT_03s0038g00970.t01	Wine grape	cytosol	80.15	79.28
Solyc11g043200.1.1	Tomato	cytosol, nucleus	21.79	78.6
CDY46101	Canola	cytosol	72.03	74.1
Bra036991.1-P	Field mustard	cytosol	71.91	73.61
Bra011458.1-P	Field mustard	cytosol	71.79	73.48
CDX68994	Canola	cytosol	71.91	73.06
AT4G33650.2	Thale cress	cytosol	70.58	72.06
CDX72418	Canola	cytosol	71.91	71.48
CDY48440	Canola	cytosol	69.73	71.38
Bra034579.1-P	Field mustard	cytosol	69.73	71.38
CDY28314	Canola	cytosol	69.49	71.22
CDX75370	Canola	cytosol	71.67	70.48
GSMUA_Achr8P08760_001	Banana	cytosol	65.25	70.0
Zm00001d042338_P002	Maize	extracellular, mitochondrion	68.4	69.16
GSMUA_Achr10P...	Banana	cytosol	65.5	69.09
AT2G14120.3	Thale cress	cytosol, plastid	67.55	68.97
EES04116	Sorghum	cytosol	68.16	68.74
Os01t0920400-01	Rice	nucleus, plastid	68.04	68.7
TraesCS3B01G465100.3	Wheat	cytosol, plastid	65.98	67.79
TraesCS3A01G428000.2	Wheat	cytosol, plastid	65.62	67.75
TraesCS3D01G423500.1	Wheat	cytosol	66.59	67.48
HORVU3Hr1G094260.4	Barley	cytosol	66.22	67.12
Zm00001d012027_P002	Maize	cytosol	68.4	66.47
TraesCS5D01G082000.4	Wheat	cytosol	52.18	62.92
TraesCS2A01G281000.2	Wheat	cytosol	58.96	62.84
TraesCS2D01G279900.2	Wheat	cytosol	58.6	62.37
TraesCS2B01G298400.1	Wheat	cytosol	58.84	62.31
Os04t0381000-01	Rice	cytosol	61.14	62.19
OQU81360	Sorghum	cytosol	56.9	62.17
HORVU2Hr1G068810.3	Barley	cytosol	58.72	60.93
Zm00001d004012_P001	Maize	cytosol	52.18	39.4
KRH46533	Soybean	cytosol, endoplasmic reticulum, nucleus	27.6	37.01
KRH04285	Soybean	cytosol	27.36	36.93
KRH27831	Soybean	cytosol, endoplasmic reticulum, nucleus	27.12	36.72
KRH60421	Soybean	endoplasmic reticulum	27.36	36.63
KRH41722	Soybean	endoplasmic reticulum, nucleus	27.36	36.63
KRH41321	Soybean	endoplasmic reticulum, nucleus	27.0	36.56
KRH47905	Soybean	cytosol, endoplasmic reticulum	26.88	36.45
KRH48908	Soybean	cytosol, nucleus	27.24	36.41
KRH60047	Soybean	endoplasmic reticulum	26.76	36.23
KRH77654	Soybean	endoplasmic reticulum	26.76	36.23
KRH66384	Soybean	cytosol, endoplasmic reticulum	26.88	35.92
KRH49665	Soybean	endoplasmic reticulum	26.03	34.79
KRH70357	Soybean	endoplasmic reticulum, nucleus	26.03	34.79
KRH06461	Soybean	cytosol	20.46	32.56
KRH21193	Soybean	cytosol	16.83	28.02
KRH42928	Soybean	cytosol	19.01	26.21
KRH59040	Soybean	cytosol	21.19	25.93
KRH21190	Soybean	cytosol	20.7	25.71
KRH11082	Soybean	cytosol	4.12	23.29
KRH01870	Soybean	endoplasmic reticulum	19.49	17.61
KRH51295	Soybean	endoplasmic reticulum	19.49	17.61
KRH42202	Soybean	nucleus	15.86	17.44
KRH36411	Soybean	endoplasmic reticulum, nucleus	19.37	17.35
KRH27552	Soybean	cytosol	19.13	17.14
KRH55251	Soybean	plastid	14.29	14.84
KRH26094	Soybean	plastid	14.41	14.8
KRH58326	Soybean	plasma membrane	7.14	11.82

Protein Annotations

Gene3D:1.20.120.1240	EntrezGene:100807752	MapMan:13.6.2.1	Gene3D:2.30.29.30	Gene3D:3.40.50.300	EMBL:ACUP02008363
ncoils:Coil	InterPro:Dynamin_GTPase	InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF	InterPro:Dynamin_central	InterPro:GED
InterPro:GED_dom	EnsemblPlantsGene:GLYMA_13G256100	GO:GO:0000166	GO:GO:0000266	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005515	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	InterPro:G_DYNAMIN_dom	UniProt:I1M2M2	InterPro:IPR011993	InterPro:IPR020850	InterPro:IPR030381
EnsemblPlants:KRH21736	ProteinID:KRH21736	ProteinID:KRH21736.1	InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF01031
PFAM:PF02212	InterPro:PH-like_dom_sf	PRINTS:PR00195	ScanProsite:PS00410	PFscan:PS51388	PFscan:PS51718
PANTHER:PTHR11566	PANTHER:PTHR11566:SF62	SMART:SM00053	SMART:SM00302	SUPFAM:SSF52540	UniParc:UPI000233B3AA
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:36153259..36162305

Molecular Weight (calculated)

90941.9 Da

IEP (calculated)

6.988

GRAVY (calculated)

-0.296

Length

826 amino acids

Sequence
(BLAST)

001: MADEVPSPPA ASAATAPLGS SVISLVNRLQ DIFARVGSQS TIDLPQVAVV GSQSSGKSSV LEALVGRDFL PRGNDICTRR PLVLQLVQTK RKPNLDNNDE
101: YGEFLHLPGR KFHDFSEIRR EIQAETDREA GGNKGVSDKQ IRLKIFSPNV LDITLVDLPG ITKVPVGDQP SDIEARIRTM IMSYIKTPTC LILAVTPANS
201: DLANSDALQM AGIADPDGNR TIGVITKLDI MDRGTDARNL LLGKVIPLRL GYVGVVNRSQ EDIQMNRSIK DALVAEENFF RNRPVYNGLA DSCGVPQLAK
301: KLNQILAQHI KAVLPGLRAR ISTSLVAVAK EHASYGEITE SKAGQGALLL NILSKYCEAF SSMLEGKNEM STSELSGGAR IHYIFQSIFV RSLEEVDPCE
401: DLTDDDIRTA IQNATGPKSA LFVPEVPFEV LVRRQISRLL DPSLQCARFI YDELIKISHR CMVTELQRFP FLRKRMDEVI GNFLREGLEP SENMIAHLIE
501: MEMDYINTSH PNFIGGSKAL EIAAQQTKSS RVAIPVSRQK DALESDKGSA SERSVKSRAI LARQANGVVT DPGVRAASDV EKIVPSGNTG GSSWGISSIF
601: GGGDSRMTMK ENIASKPHAE PVHSIEQSIS MIHLREPPPI LRPSESNSET EAIEITVTKL LLRSYYGIVR KNVEDLIPKA IMHFLVNNTK RELHNVFIKK
701: LYRDNLFEEM LQEPDEIAVK RKRCRELLRA YQQAFKDLEE LPLEAETVER GYSLPETSGL PKIHGLPTSS MYSTSSSGDY YAASPKHSRS KRSSHSGELQ
801: SPLHANADSN GSGRPFMSGF YPTVDA

Best Arabidopsis Sequence Match ( AT4G33650.1 )
(BLAST)

001: MTIEEVSGET PPSTPPSSST PSPSSSTTNA APLGSSVIPI VNKLQDIFAQ LGSQSTIALP QVVVVGSQSS GKSSVLEALV GRDFLPRGND ICTRRPLVLQ
101: LLQTKSRANG GSDDEWGEFR HLPETRFYDF SEIRREIEAE TNRLVGENKG VADTQIRLKI SSPNVLNITL VDLPGITKVP VGDQPSDIEA RIRTMILSYI
201: KQDTCLILAV TPANTDLANS DALQIASIVD PDGHRTIGVI TKLDIMDKGT DARKLLLGNV VPLRLGYVGV VNRCQEDILL NRTVKEALLA EEKFFRSHPV
301: YHGLADRLGV PQLAKKLNQI LVQHIKVLLP DLKSRISNAL VATAKEHQSY GELTESRAGQ GALLLNFLSK YCEAYSSLLE GKSEEMSTSE LSGGARIHYI
401: FQSIFVKSLE EVDPCEDLTD DDIRTAIQNA TGPRSALFVP DVPFEVLVRR QISRLLDPSL QCARFIFEEL IKISHRCMMN ELQRFPVLRK RMDEVIGDFL
501: REGLEPSEAM IGDIIDMEMD YINTSHPNFI GGTKAVEAAM HQVKSSRIPH PVARPKDTVE PDRTSSSTSQ VKSRSFLGRQ ANGIVTDQGV VSADAEKAQP
601: AANASDTRWG IPSIFRGGDT RAVTKDSLLN KPFSEAVEDM SHNLSMIYLK EPPAVLRPTE THSEQEAVEI QITKLLLRSY YDIVRKNIED SVPKAIMHFL
701: VNHTKRELHN VFIKKLYREN LFEEMLQEPD EIAVKRKRTQ ETLHVLQQAY RTLDELPLEA DSVSAGMSKH QELLTSSKYS TSSSYSASPS TTRRSRRAGD
801: QHQNGYGF

Arabidopsis Description

DRP3ANOXY15 [Source:UniProtKB/TrEMBL;Acc:A0A178UUQ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.