CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
nucleus: 27291164
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90331
KRH02873
KRH63067
KRH71091
KRH71102

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14830.1	KRH63067	AT1G13520.1	21798944
AT1G14830.1	KRH71091	AT1G13520.1	21798944
AT1G14830.1	KRH71102	AT1G13520.1	21798944
AT1G14830.1	KRG90331	AT5G57460.1	24529374
AT1G14830.1	KRH02873	AT5G57460.1	24529374

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60421	Soybean	endoplasmic reticulum	99.35	99.35
AT1G14830.1	Thale cress	cytosol	87.2	87.62
Bra026801.1-P	Field mustard	cytosol	86.71	87.13
CDX81675	Canola	cytosol	86.71	87.13
CDX84001	Canola	cytosol	86.71	87.13
CDY33737	Canola	cytosol	86.71	87.13
KRH49665	Soybean	endoplasmic reticulum	87.2	87.06
KRH70357	Soybean	endoplasmic reticulum, nucleus	87.2	87.06
Bra016679.1-P	Field mustard	cytosol	86.55	86.97
CDY52026	Canola	cytosol	86.55	86.97
VIT_01s0011g05800.t01	Wine grape	cytosol	84.6	85.16
GSMUA_Achr2P21630_001	Banana	cytosol	83.95	85.06
GSMUA_Achr7P11190_001	Banana	cytosol	83.95	84.64
Os03t0713100-01	Rice	plasma membrane	83.63	84.45
Zm00001d013426_P002	Maize	plasma membrane	83.31	84.12
KXG37727	Sorghum	cytosol, mitochondrion	82.82	83.5
Zm00001d033751_P003	Maize	plasma membrane	82.5	83.31
TraesCS4D01G047600.1	Wheat	golgi, nucleus, unclear	81.36	82.3
TraesCS4B01G047700.1	Wheat	cytosol	81.36	82.3
TraesCS4A01G266600.1	Wheat	cytosol	81.36	82.3
Solyc01g005310.2.1	Tomato	plastid	81.69	81.03
KRH46533	Soybean	cytosol, endoplasmic reticulum, nucleus	78.61	78.73
PGSC0003DMT400051417	Potato	cytosol	70.34	78.48
KRH48908	Soybean	cytosol, nucleus	77.8	77.67
KRH66384	Soybean	cytosol, endoplasmic reticulum	77.47	77.35
HORVU4Hr1G007880.11	Barley	cytosol	79.42	77.17
KRH04285	Soybean	cytosol	72.12	72.71
KRH77654	Soybean	endoplasmic reticulum	67.42	68.2
KRH41321	Soybean	endoplasmic reticulum, nucleus	67.42	68.2
KRH27831	Soybean	cytosol, endoplasmic reticulum, nucleus	67.42	68.2
KRH60047	Soybean	endoplasmic reticulum	67.1	67.87
KRH47905	Soybean	cytosol, endoplasmic reticulum	65.8	66.67
KRH06461	Soybean	cytosol	51.86	61.66
KRH10618	Soybean	plastid	36.63	27.46
KRH21736	Soybean	nucleus	36.63	27.36
KRH49844	Soybean	plastid	35.82	27.22
KRH42074	Soybean	endoplasmic reticulum, nucleus	35.82	27.15
KRH62781	Soybean	nucleus	35.49	26.81
KRH21193	Soybean	cytosol	20.42	25.4
KRH42928	Soybean	cytosol	23.18	23.87
KRH59040	Soybean	cytosol	25.77	23.56
KRH21190	Soybean	cytosol	24.96	23.16
KRH11082	Soybean	cytosol	5.35	22.6
KRH36411	Soybean	endoplasmic reticulum, nucleus	30.15	20.17
KRH27552	Soybean	cytosol	29.82	19.96
KRH51295	Soybean	endoplasmic reticulum	29.17	19.69
KRH01870	Soybean	endoplasmic reticulum	29.01	19.58
KRH42202	Soybean	nucleus	20.1	16.51
KRH55251	Soybean	plastid	20.91	16.23
KRH26094	Soybean	plastid	20.42	15.67
KRH58326	Soybean	plasma membrane	9.08	11.22

Protein Annotations

Gene3D:1.20.120.1240	EntrezGene:100798582	MapMan:22.1.7.1	Gene3D:3.40.50.300	EMBL:ACUP02004777	InterPro:Dynamin_GTPase
InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF	InterPro:Dynamin_central	InterPro:GED	InterPro:GED_dom	EnsemblPlantsGene:GLYMA_08G046400
GO:GO:0000166	GO:GO:0000266	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005515	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:G_DYNAMIN_dom
UniProt:I1KQC2	InterPro:IPR020850	InterPro:IPR030381	EnsemblPlants:KRH41722	ProteinID:KRH41722	ProteinID:KRH41722.1
InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF01031	PFAM:PF02212	PRINTS:PR00195	ScanProsite:PS00410
PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF80	SMART:SM00053	SMART:SM00302
SUPFAM:SSF52540	UniParc:UPI0002337DD1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:3647727..3656838

Molecular Weight (calculated)

69373.3 Da

IEP (calculated)

7.998

GRAVY (calculated)

-0.396

Length

617 amino acids

Sequence
(BLAST)

001: MATMTSLIGL INKIQRACTV LGDHGGEGLS LWEALPSVAV VGGQSSGKSS VLESVVGRDF LPRGSGIVTR RPLVLQLHKT EEGTHEYAEF LHIPRRRFTD
101: FAAVRKEIAD ETDRITGKTK QISNIPIHLS IYSPNVVNLT LIDLPGLTKV AVEGQQESIV QDIENMVRSY VEKPNCIILA ISPANQDIAT SDAIKIAREV
201: DPSGERTFGV VTKLDLMDKG TNAVDVLEGR QYRLQHPWVG IVNRSQADIN RNVDMIAARR KEREYFETSP EYGHLAHKMG SEYLAKLLSQ HLEQVIRQKI
301: PSIIALINKT IDELNAELDR IGRPIAVDSG AQLYTILEMC RAFDKVFREH LDGGRPGGDR IYGVFDHQLP AALKKLPFDR HLSLKNVQRV VTEADGYQPH
401: LIAPEQGYRR LIEGSIGYFK GPAEASVDAV HFVLKELVRK SISETEELKR FPTLSNDIAT AANEALEKFR EESRKTVLRL VDMESSYLTV EFFRKIHFEP
501: EKNPNGPPNP NRNGPPNMDS YTDNHLRKIG SNVNSYIGMV CDTLKNTIPK AVVHCQVREA KRSLLNHFYV HVGRKEKEKL GAMLDEDPAL MDRRNQIAKR
601: LELYKQARDD IDSVAWK

Best Arabidopsis Sequence Match ( AT1G14830.1 )
(BLAST)

001: MATMKSLIGL INKIQRACTV LGDHGGEGMS LWEALPTVAV VGGQSSGKSS VLESVVGRDF LPRGSGIVTR RPLVLQLHKT EDGTTEYAEF LHAPKKRFAD
101: FAAVRKEIED ETDRITGKSK QISNIPIQLS IYSPNVVNLT LIDLPGLTKV AVDGQPESIV QDIENMVRSY VEKPNCIILA ISPANQDIAT SDAIKLAREV
201: DPTGERTFGV ATKLDIMDKG TDCLDVLEGR SYRLQHPWVG IVNRSQADIN KRVDMIAARR KEQEYFETSP EYGHLASRMG SEYLAKLLSQ HLETVIRQKI
301: PSIVALINKS IDEINAELDR IGRPIAVDSG AQLYTILELC RAFDRVFKEH LDGGRPGGDR IYGVFDHQLP AALKKLPFDR HLSTKNVQKV VSEADGYQPH
401: LIAPEQGYRR LIDGSISYFK GPAEATVDAV HFVLKELVRK SISETEELKR FPTLASDIAA AANEALERFR DESRKTVLRL VDMESSYLTV EFFRKLHLEP
501: EKEKPNPRNA PAPNADPYSD NHFRKIGSNV SAYINMVCDT LRNSLPKAVV YCQVREAKRS LLNFFYAQVG RKEKEKLGAM LDEDPQLMER RGTLAKRLEL
601: YKQARDDIDA VAWK

Arabidopsis Description

DRP1CDRP1C [Source:UniProtKB/TrEMBL;Acc:A0A178W4V6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.