CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, mitochondrion

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES09009
EES14778
OQU80420

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14830.1	EES09009	AT1G13520.1	21798944
AT1G14830.1	OQU80420	AT1G13520.1	21798944
AT1G14830.1	EES14778	AT5G57460.1	24529374

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013426_P002	Maize	plasma membrane	99.18	99.35
Os03t0713100-01	Rice	plasma membrane	95.59	95.74
TraesCS4D01G047600.1	Wheat	golgi, nucleus, unclear	92.65	92.95
TraesCS4B01G047700.1	Wheat	cytosol	92.65	92.95
TraesCS4A01G266600.1	Wheat	cytosol	92.65	92.95
HORVU4Hr1G007880.11	Barley	cytosol	90.69	87.4
GSMUA_Achr2P21630_001	Banana	cytosol	85.95	86.37
GSMUA_Achr7P11190_001	Banana	cytosol	85.29	85.29
KRH41722	Soybean	endoplasmic reticulum, nucleus	83.5	82.82
KRH60421	Soybean	endoplasmic reticulum	83.33	82.66
VIT_01s0011g05800.t01	Wine grape	cytosol	82.52	82.38
CDX84001	Canola	cytosol	81.86	81.6
AT1G14830.1	Thale cress	cytosol	81.86	81.6
CDY52026	Canola	cytosol	81.7	81.43
KRH70357	Soybean	endoplasmic reticulum, nucleus	82.19	81.39
Bra026801.1-P	Field mustard	cytosol	81.54	81.27
CDX81675	Canola	cytosol	81.54	81.27
CDY33737	Canola	cytosol	81.54	81.27
KRH49665	Soybean	endoplasmic reticulum	82.03	81.23
Bra016679.1-P	Field mustard	cytosol	81.37	81.11
Solyc01g005310.2.1	Tomato	plastid	82.19	80.87
KXG38886	Sorghum	cytosol	80.39	78.1
PGSC0003DMT400051417	Potato	cytosol	69.93	77.4
EER98546	Sorghum	cytosol	75.98	74.52
EES19921	Sorghum	cytosol	68.79	69.13
EES01270	Sorghum	cytosol	66.83	67.16
OQU81360	Sorghum	cytosol	33.82	27.38
EES04116	Sorghum	cytosol	35.78	26.74
EER95148	Sorghum	cytosol	25.65	23.19
KXG39737	Sorghum	cytosol	24.67	23.09
KXG25176	Sorghum	cytosol	23.86	19.41
EER88160	Sorghum	cytosol, endoplasmic reticulum, nucleus	28.1	18.84
EES05560	Sorghum	nucleus	28.27	18.78
EES16755	Sorghum	cytosol	20.1	16.25
EES03602	Sorghum	plastid	20.26	15.03

Protein Annotations

Gene3D:1.20.120.1240	MapMan:22.1.7.1	Gene3D:3.40.50.300	UniProt:A0A1B6QII7	InterPro:Dynamin_GTPase	InterPro:Dynamin_GTPase_CS
InterPro:Dynamin_SF	InterPro:Dynamin_central	InterPro:GED	InterPro:GED_dom	GO:GO:0000166	GO:GO:0000266
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005886	GO:GO:0005938	GO:GO:0007005
GO:GO:0007275	GO:GO:0008150	GO:GO:0009504	GO:GO:0009506	GO:GO:0009987	GO:GO:0010152
GO:GO:0016020	GO:GO:0016043	GO:GO:0016787	InterPro:G_DYNAMIN_dom	InterPro:IPR020850	InterPro:IPR030381
EnsemblPlants:KXG37727	ProteinID:KXG37727	ProteinID:KXG37727.1	InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF01031
PFAM:PF02212	PRINTS:PR00195	ScanProsite:PS00410	PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566
PANTHER:PTHR11566:SF80	SMART:SM00053	SMART:SM00302	EnsemblPlantsGene:SORBI_3001G116000	SUPFAM:SSF52540	UniParc:UPI0001C80D22
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:9040579..9047006

Molecular Weight (calculated)

68005.8 Da

IEP (calculated)

8.614

GRAVY (calculated)

-0.326

Length

612 amino acids

Sequence
(BLAST)

001: MATMGSLIGL VNRIQRACTV LGDHGGGAGG EGSLWEALPS VAVVGGQSSG KSSVLESIVG RDFLPRGSGI VTRRPLVLQL HKTDGGHEYA EFLHAPRKRF
101: TDFAAVRKEI ADETDRITGK TKAISNVPIH LSIYSPHVVN LTLIDLPGLT KVAVEGQAES IVQDIENMVR SYVDKPNCII LAISPANQDI ATSDAIKLAR
201: DVDPSGDRTF GVLTKLDLMD KGTNAVDVLE GRQYRLQHPW VGIVNRSQAD INKNVDMLSA RRKEKEYFES SPEYGHLAHK MGAEYLAKLL SQHLEAVIRA
301: KIPSIIAMIN KTIDEIEAQL DRLGRPIGGD AGAQLYTILD MCRAFDRVFK EHLDGGRPGG DRIYGVFDNQ LPAALKKLPF DRHLSMQNVR KVISEADGYQ
401: PHLIAPEQGY RRLIDSSLSY FKGPAEASVD AVHLVLKELV RRSIAATEEL KRFPTLQSDI AAAANDSLER FREDGRKTVL RLVEMEASYL TVEFFRKLPT
501: EPEKAADKNT PVSDRYQDNH LRRIGSNVSS YINMVCETLR NTIPKAIVHC QVKEAKRNLL NRFYAHVGSK EKKQLSAMLD EDPALMEKRD ALVKRLELYK
601: SARNEIDSVA WK

Best Arabidopsis Sequence Match ( AT1G14830.1 )
(BLAST)

001: MATMKSLIGL INKIQRACTV LGDHGGEGMS LWEALPTVAV VGGQSSGKSS VLESVVGRDF LPRGSGIVTR RPLVLQLHKT EDGTTEYAEF LHAPKKRFAD
101: FAAVRKEIED ETDRITGKSK QISNIPIQLS IYSPNVVNLT LIDLPGLTKV AVDGQPESIV QDIENMVRSY VEKPNCIILA ISPANQDIAT SDAIKLAREV
201: DPTGERTFGV ATKLDIMDKG TDCLDVLEGR SYRLQHPWVG IVNRSQADIN KRVDMIAARR KEQEYFETSP EYGHLASRMG SEYLAKLLSQ HLETVIRQKI
301: PSIVALINKS IDEINAELDR IGRPIAVDSG AQLYTILELC RAFDRVFKEH LDGGRPGGDR IYGVFDHQLP AALKKLPFDR HLSTKNVQKV VSEADGYQPH
401: LIAPEQGYRR LIDGSISYFK GPAEATVDAV HFVLKELVRK SISETEELKR FPTLASDIAA AANEALERFR DESRKTVLRL VDMESSYLTV EFFRKLHLEP
501: EKEKPNPRNA PAPNADPYSD NHFRKIGSNV SAYINMVCDT LRNSLPKAVV YCQVREAKRS LLNFFYAQVG RKEKEKLGAM LDEDPQLMER RGTLAKRLEL
601: YKQARDDIDA VAWK

Arabidopsis Description

DRP1CDRP1C [Source:UniProtKB/TrEMBL;Acc:A0A178W4V6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.