Factsheet for GSMUA_Achr2P21630_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P06220_001
GSMUA_Achr3P27960_001
GSMUA_Achr5P27350_001
GSMUA_Achr5P27360_001
GSMUA_Achr9P18410_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14830.1	GSMUA_Achr3P06220_001	AT1G13520.1	21798944
AT1G14830.1	GSMUA_Achr5P27350_001	AT1G13520.1	21798944
AT1G14830.1	GSMUA_Achr5P27360_001	AT1G13520.1	21798944
AT1G14830.1	GSMUA_Achr9P18410_001	AT1G13520.1	21798944
AT1G14830.1	GSMUA_Achr3P27960_001	AT5G57460.1	24529374

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P11190_001	Banana	cytosol	91.95	91.5
Zm00001d013426_P002	Maize	plasma membrane	86.7	86.42
Zm00001d033751_P003	Maize	plasma membrane	86.37	86.09
KXG37727	Sorghum	cytosol, mitochondrion	86.37	85.95
Os03t0713100-01	Rice	plasma membrane	85.71	85.43
TraesCS4D01G047600.1	Wheat	golgi, nucleus, unclear	85.55	85.41
TraesCS4B01G047700.1	Wheat	cytosol	85.55	85.41
TraesCS4A01G266600.1	Wheat	cytosol	85.55	85.41
VIT_01s0011g05800.t01	Wine grape	cytosol	85.71	85.16
CDX84001	Canola	cytosol	84.89	84.2
KRH60421	Soybean	endoplasmic reticulum	85.22	84.12
AT1G14830.1	Thale cress	cytosol	84.73	84.04
CDY52026	Canola	cytosol	84.73	84.04
KRH41722	Soybean	endoplasmic reticulum, nucleus	85.06	83.95
Bra016679.1-P	Field mustard	cytosol	84.4	83.71
Bra026801.1-P	Field mustard	cytosol	84.07	83.39
CDX81675	Canola	cytosol	84.07	83.39
CDY33737	Canola	cytosol	84.07	83.39
GSMUA_Achr2P18210_001	Banana	cytosol	82.43	82.16
GSMUA_Achr11P...	Banana	cytosol	82.59	81.92
Solyc01g005310.2.1	Tomato	plastid	83.58	81.83
KRH49665	Soybean	endoplasmic reticulum	82.1	80.91
KRH70357	Soybean	endoplasmic reticulum, nucleus	82.1	80.91
HORVU4Hr1G007880.11	Barley	cytosol	82.92	79.53
PGSC0003DMT400051417	Potato	cytosol	71.76	79.02
GSMUA_AchrUn_...	Banana	cytosol	81.44	78.86
GSMUA_Achr6P26600_001	Banana	cytosol	71.92	71.92
GSMUA_Achr8P27540_001	Banana	cytosol	70.77	70.77
GSMUA_Achr1P04880_001	Banana	cytosol	70.28	70.16
GSMUA_Achr10P...	Banana	cytosol	35.8	27.84
GSMUA_Achr8P19650_001	Banana	cytosol, mitochondrion	22.82	24.96
GSMUA_Achr8P08760_001	Banana	cytosol	29.72	23.51
GSMUA_Achr1P18350_001	Banana	cytosol	29.72	20.25
GSMUA_Achr3P01090_001	Banana	nucleus	29.72	19.72
GSMUA_Achr4P20040_001	Banana	cytosol	29.56	19.59
GSMUA_Achr7P05530_001	Banana	nucleus	29.06	19.22
GSMUA_Achr2P09480_001	Banana	plastid	21.02	15.65
GSMUA_Achr10P...	Banana	cytosol	16.09	14.43

Protein Annotations

Gene3D:1.20.120.1240	MapMan:22.1.7.1	Gene3D:3.40.50.300	InterPro:Dynamin_GTPase	InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF
InterPro:Dynamin_central	InterPro:GED	InterPro:GED_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr2G21630_001	EnsemblPlants:GSMUA_Achr2P21630_001
EnsemblPlants:GSMUA_Achr2T21630_001	InterPro:G_DYNAMIN_dom	InterPro:IPR020850	InterPro:IPR030381	UniProt:M0SA04	InterPro:P-loop_NTPase
PFAM:PF00350	PFAM:PF01031	PFAM:PF02212	PRINTS:PR00195	ScanProsite:PS00410	PFscan:PS51388
PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF80	SMART:SM00053	SMART:SM00302	SUPFAM:SSF52540
UniParc:UPI000295EC6F	SEG:seg	:	:	:	:

Description

Dynamin-related protein 1C [Source:GMGC_GENE;Acc:GSMUA_Achr2G21630_001]

Coordinates

chr2:+:21019254..21030736

Molecular Weight (calculated)

67794.2 Da

IEP (calculated)

7.344

GRAVY (calculated)

-0.332

Length

609 amino acids

Sequence
(BLAST)

001: MATMESLIGL VNRIQRACTV LGDHGGEGSL WEALPSVAVV GGQSSGKSSV LESVVGRDFL PRGSGIVTRR PLVLQLHKTD AGTEYAEFLH APRKKLTDFA
101: AVRKEIQDET DRITGKSKQI SNVPIHLSIY SPHVVNLTLI DLPGLTKVAV EDQPESIVQD IENMVRSYVE KPNCIILAIS PANQDIATSD AIKLGREVDP
201: AGERTFGVLT KLDLMDKGTN ALDVLEGRSY RLQHPWVGIV NRSQADINKN VDMIAARRKE QEYFATSPDY GHLAHKMGSE YLAKLLSQHL ESVIRARIPS
301: IIALINKTIS ELDAELDWLG RPIGVDSGAQ LYTILEMCRA FDRIFKEHLD GGRPGGDRIY GVFDNQLPAA LKKLPFDRHL SLHNVRKVIS EADGYQPHLI
401: APEQGYRRLI DSSLSYFKGP AEASVDAVHF VLKDLVRKSI GETEELKRFP TLQADISAAA NEALERFRDD SRKTVLRLVD MEASYLTVEF FRKLSHEPEK
501: GSNPTSTPAT DRYGDNHLRK IGSNVSAYVG MVYDTLKNTI PKAIVHSQVR EAKRSLLNHF YAQVGSREKK QLGAMLDEDP TLMEKRDAIA KRLQLYTSAR
601: DEIDSVAWK

Best Arabidopsis Sequence Match ( AT1G14830.1 )
(BLAST)

001: MATMKSLIGL INKIQRACTV LGDHGGEGMS LWEALPTVAV VGGQSSGKSS VLESVVGRDF LPRGSGIVTR RPLVLQLHKT EDGTTEYAEF LHAPKKRFAD
101: FAAVRKEIED ETDRITGKSK QISNIPIQLS IYSPNVVNLT LIDLPGLTKV AVDGQPESIV QDIENMVRSY VEKPNCIILA ISPANQDIAT SDAIKLAREV
201: DPTGERTFGV ATKLDIMDKG TDCLDVLEGR SYRLQHPWVG IVNRSQADIN KRVDMIAARR KEQEYFETSP EYGHLASRMG SEYLAKLLSQ HLETVIRQKI
301: PSIVALINKS IDEINAELDR IGRPIAVDSG AQLYTILELC RAFDRVFKEH LDGGRPGGDR IYGVFDHQLP AALKKLPFDR HLSTKNVQKV VSEADGYQPH
401: LIAPEQGYRR LIDGSISYFK GPAEATVDAV HFVLKELVRK SISETEELKR FPTLASDIAA AANEALERFR DESRKTVLRL VDMESSYLTV EFFRKLHLEP
501: EKEKPNPRNA PAPNADPYSD NHFRKIGSNV SAYINMVCDT LRNSLPKAVV YCQVREAKRS LLNFFYAQVG RKEKEKLGAM LDEDPQLMER RGTLAKRLEL
601: YKQARDDIDA VAWK

Arabidopsis Description

DRP1CDRP1C [Source:UniProtKB/TrEMBL;Acc:A0A178W4V6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.