Factsheet for Zm00001d013426_P002

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plasma membrane: 23353019
plasma membrane: 23508561
nucleus: 24677780
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 24677780 doi

B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni

State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.

msms PMID: 23353019 doi

D Hopff, S Wienkoop, S Lüthje

University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d024416_P001
Zm00001d050302_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14830.1	Zm00001d050302_P001	AT1G13520.1	21798944
AT1G14830.1	Zm00001d024416_P001	AT5G57460.1	24529374

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG37727	Sorghum	cytosol, mitochondrion	99.35	99.18
Zm00001d033751_P003	Maize	plasma membrane	99.02	99.02
Os03t0713100-01	Rice	plasma membrane	95.74	95.74
TraesCS4A01G266600.1	Wheat	cytosol	92.8	92.95
TraesCS4B01G047700.1	Wheat	cytosol	92.8	92.95
TraesCS4D01G047600.1	Wheat	golgi, nucleus, unclear	92.8	92.95
HORVU4Hr1G007880.11	Barley	cytosol	90.83	87.4
GSMUA_Achr2P21630_001	Banana	cytosol	86.42	86.7
GSMUA_Achr7P11190_001	Banana	cytosol	86.09	85.95
KRH41722	Soybean	endoplasmic reticulum, nucleus	84.12	83.31
KRH60421	Soybean	endoplasmic reticulum	83.96	83.14
VIT_01s0011g05800.t01	Wine grape	cytosol	83.31	83.03
CDX84001	Canola	cytosol	82.49	82.08
AT1G14830.1	Thale cress	cytosol	82.49	82.08
CDY52026	Canola	cytosol	82.32	81.92
CDY33737	Canola	cytosol	82.16	81.76
CDX81675	Canola	cytosol	82.16	81.76
Bra026801.1-P	Field mustard	cytosol	82.16	81.76
Bra016679.1-P	Field mustard	cytosol	82.0	81.6
KRH70357	Soybean	endoplasmic reticulum, nucleus	82.49	81.55
KRH49665	Soybean	endoplasmic reticulum	82.32	81.39
Solyc01g005310.2.1	Tomato	plastid	82.65	81.19
PGSC0003DMT400051417	Potato	cytosol	70.21	77.58
Zm00001d030005_P002	Maize	cytosol, mitochondrion	49.1	74.63
Zm00001d005306_P002	Maize	cytosol, extracellular, mitochondrion	75.61	73.57
Zm00001d009504_P002	Maize	cytosol	68.58	63.87
Zm00001d038955_P001	Maize	cytosol, mitochondrion, plasma membrane	68.9	62.84
Zm00001d042338_P002	Maize	extracellular, mitochondrion	35.68	26.68
Zm00001d012027_P002	Maize	cytosol	36.01	25.88
Zm00001d028495_P001	Maize	cytosol	25.7	23.29
Zm00001d028497_P001	Maize	cytosol	21.28	20.83
Zm00001d017979_P002	Maize	extracellular, mitochondrion	28.15	18.68
Zm00001d037279_P005	Maize	plasma membrane	27.82	18.62
Zm00001d044757_P006	Maize	cytosol, nucleus, plasma membrane	27.66	18.51
Zm00001d004012_P001	Maize	cytosol	32.57	18.19
Zm00001d032256_P001	Maize	cytosol	25.7	16.88
Zm00001d023583_P005	Maize	plastid	20.79	16.75
Zm00001d043451_P001	Maize	plastid	20.29	15.07
Zm00001d012752_P006	Maize	plastid	18.99	13.83
Zm00001d051815_P002	Maize	cytosol	9.98	11.11

Protein Annotations

Gene3D:1.20.120.1240	MapMan:22.1.7.1	Gene3D:3.40.50.300	ProteinID:AQK63449.1	EMBL:BT067775	UniProt:C0PHK6
InterPro:Dynamin_GTPase	InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF	InterPro:Dynamin_central	InterPro:GED	InterPro:GED_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0016787	InterPro:G_DYNAMIN_dom	InterPro:IPR020850	InterPro:IPR030381	InterPro:P-loop_NTPase	PFAM:PF00350
PFAM:PF01031	PFAM:PF02212	PRINTS:PR00195	ScanProsite:PS00410	PFscan:PS51388	PFscan:PS51718
PANTHER:PTHR11566	PANTHER:PTHR11566:SF80	SMART:SM00053	SMART:SM00302	SUPFAM:SSF52540	UniParc:UPI000195CDCC
EnsemblPlantsGene:Zm00001d013426	EnsemblPlants:Zm00001d013426_P002	EnsemblPlants:Zm00001d013426_T002	SEG:seg	:	:

Description

Dynamin-related protein 1C

Coordinates

chr5:-:11127260..11135273

Molecular Weight (calculated)

67988.7 Da

IEP (calculated)

8.425

GRAVY (calculated)

-0.332

Length

611 amino acids

Sequence
(BLAST)

001: MATMESLIGL VNRIQRACTV LGDHGGGGGE GSLWEALPSV AVVGGQSSGK SSVLESIVGR DFLPRGSGIV TRRPLVLQLH KTDGGHEYAE FLHAPRKRFT
101: DFAAVRKEIA DETDRITGKT KAISNVPIHL SIYSPHVVNL TLIDLPGLTK VAVEGQAESI VQDIENMVRS YVDKPNCIIL AISPANQDIA TSDAIKLARD
201: VDPSGDRTFG VLTKLDLMDK GTNAVDVLEG RQYRLQHPWV GIVNRSQADI NKNVDMLSAR RKEKEYFESS PEYGHLAHKM GAEYLAKLLS QHLEAVIRAK
301: IPSIIALINK TIDEIEAQLD RLGRPIGGDA GAQLYTILDM CRAFDRVFKE HLDGGRPGGD RIYGVFDNQL PAALKKLPFD RHLSMQNVRK VISEADGYQP
401: HLIAPEQGYR RLIDSSLSYF KGPAEASVDA VHLVLKELVR RSIAATEELK RFPTLQSDIA AAANESLERF REDGRKTVLR LVEMEASYLT VEFFRKLPTE
501: PEKAADKNTP VSDRYQDNHL RRIGSNVSSY INMVCETLRN TIPKAVVHCQ VKEAKRNLLN RFYAHVGSKE KKQLSAMLDE DPALMEKRDA LVKRLELYKS
601: ARNEIDSVAW K

Best Arabidopsis Sequence Match ( AT1G14830.1 )
(BLAST)

001: MATMKSLIGL INKIQRACTV LGDHGGEGMS LWEALPTVAV VGGQSSGKSS VLESVVGRDF LPRGSGIVTR RPLVLQLHKT EDGTTEYAEF LHAPKKRFAD
101: FAAVRKEIED ETDRITGKSK QISNIPIQLS IYSPNVVNLT LIDLPGLTKV AVDGQPESIV QDIENMVRSY VEKPNCIILA ISPANQDIAT SDAIKLAREV
201: DPTGERTFGV ATKLDIMDKG TDCLDVLEGR SYRLQHPWVG IVNRSQADIN KRVDMIAARR KEQEYFETSP EYGHLASRMG SEYLAKLLSQ HLETVIRQKI
301: PSIVALINKS IDEINAELDR IGRPIAVDSG AQLYTILELC RAFDRVFKEH LDGGRPGGDR IYGVFDHQLP AALKKLPFDR HLSTKNVQKV VSEADGYQPH
401: LIAPEQGYRR LIDGSISYFK GPAEATVDAV HFVLKELVRK SISETEELKR FPTLASDIAA AANEALERFR DESRKTVLRL VDMESSYLTV EFFRKLHLEP
501: EKEKPNPRNA PAPNADPYSD NHFRKIGSNV SAYINMVCDT LRNSLPKAVV YCQVREAKRS LLNFFYAQVG RKEKEKLGAM LDEDPQLMER RGTLAKRLEL
601: YKQARDDIDA VAWK

Arabidopsis Description

DRP1CDRP1C [Source:UniProtKB/TrEMBL;Acc:A0A178W4V6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.